Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0632 ATGAAGAATGGTCTTTCTTCCCCACTCACGGATGATACCAAGCTTCACAGTGTCTCACTTTATTTGTTCACCAAGGCTTGGGTTCCTCCGAAGAAAATCTCGACATCATGGCAACACCATGGGGGGATCCAAAATGATCGTTTACCCTTGAAGATGTCAAACAAAGTACGTGCCATTTATGATTCTGCAAAAGGCCACGAGAAAAAGCTACTTCAATCATTGGATGACAATGAAAGCGTAGTGGTGAGTGATATTGTGGTTGTTAGTAAAGATGGAAGCAGAAACTTTACCACTATCAACGATGCTATAGCTACTGCACCAAATAACCCAGCTGCTACCGATGGCTACTTCATCATTTTCATCACCGAGGCTGTGGTAGCACAAGGATTCGTAACAATGAATGTAACATTCCGCAACACTGCTGGGCCAAGGTACCAAGACACTTTATACACGCATTCTCTGAGGCAATTTTATCGCGAATGTGAGATTTATGGCACAGTTGAATTCATGTTTGGAAATACAGCTGTTGTTATGCAAAACTGCAACATGTTGCTCGCCTCCCCATGA 567 0.4303 MKNGLSSPLTDDTKLHSVSLYLFTKAWVPPKKISTSWQHHGGIQNDRLPLKMSNKVRAIYDSAKGHEKKLLQSLDDNESVVVSDIVVVSKDGSRNFTTINDAIATAPNNPAATDGYFIIFITEAVVAQGFVTMNVTFRNTAGPRYQDTLYTHSLRQFYRECEIYGTVEFMFGNTAVVMQNCNMLLASP 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0632 188 PANTHER PECTINESTERASE 122 143 - -
Ssu4g0632 188 PANTHER PECTINESTERASE 145 184 - -
Ssu4g0632 188 PANTHER PECTINESTERASE 4 125 - -
Ssu4g0632 188 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 4 125 - -
Ssu4g0632 188 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 145 184 - -
Ssu4g0632 188 SUPERFAMILY Pectin lyase-like 81 188 IPR011050 -
Ssu4g0632 188 Pfam Pectinesterase 145 187 IPR000070 GO:0030599|GO:0042545
Ssu4g0632 188 Gene3D - 145 188 IPR012334 -
Ssu4g0632 188 Gene3D - 43 125 IPR012334 -
Ssu4g0632 188 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 122 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0632 Ssu-Chr4 10019913 10020843 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0632 1 188 Carbohydrate Esterase AT4G02330 39.630 6.36e-54 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0632 K01051 - gmx:100792847 231.106