Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0630 ATGGCTTTCAAGAACTTGTCCGTTCTTACGCTCTGTGTTTCCCTTATGCTATCCTTCTGGGCATCGATTTCCATAGCTGATAACCATGCAATCGTTCCACCAGAAACCATTTGCAGATCCACCGTAGACCCTTCCTCCTGCAAAACTGTGCTTGCTAATCAAAATGGCAACATCTTTGACTATGGCCGAATTTCTGTCCGAAAGTCCTTGTCCCAGTCCCGCAAATTCTTGGACTTAGTAAATTCATTTCTTCAAGACAGATCCTCTTTGTCTCTACCCACAATTCGCGCCCTTGAAGACTGTCGATTCCTCGCTGAACAAAACTTCGAATACTTATCAAACGCACTTGACGCTGTTAATAAAGCTAGTGATGTTCTTCCCACCTTTCAAGCCGAAGAACAGCACACCATGCTTAGTGCTGTTTTGACAAACGAAGAAACTTGTTTAGAAGGCTTACAGACCATAGCTTCTGATCAAAGAGTGAAGAGCAATCTTTTCTCCTCACTCTCTGATGATACGAAGCTTCACAGTGTTTCCCTTGCCTTGTTTACGAAGGGTTGGGTGCCTGAGAGGAAAATCTCAACATCATGGTTCCACAATGGGAGACATTTGGATTTCCGCAATGGACATTTACCATTGAAGATGTCAAACCGTGTACGTGCCATTTATGATTCTGCTAGAGGTCACGGGAGAAAACTACTTCAAGATAGCCAAAGTGTAGTGGGAAGTGACATTGTGGTTGTTAGTCAGGATGGAAGCGGCAACTTCACCACTATCAACGATGCTATAGCAGCTGCGCCAAATAACACAGTTGCTAGTGCtggttactttttaatttttgtcactCAAGGTGTGTATCAAGAGTATGTATCCatagacaaaaacaaaaagtactTGATGATGGTTGGAGATGGGATCAATCGAACGATTATCACCGGTGATCACAATGTTGTCGATAATTTTACAACATTCAACTCAGCAACATTTGCTGTGGTGGCACAAGGGTTCGTAGCAGTTAACATAACATTCCGAAACACTGCTGGGCCAAGCAAGCACCAAGCAGTTGCAGTGAGAAACGGAGCTGATATGTCCACCTTCTATAGCTGCAGCTTTGAAGGGTATCAAGACACTTTGTACACGCATTCTCTTAGGCAGTTTTACCGTGAATGTGACGTCTATGGCACGGTTGACTTCATATTTGGAAATGCTGCTGTTGTTTTCCAAGCATGTAACATGTATCCCCGCCTTCCCCTGAATGGACAATTCAATGCCATCACCGCACAAGGCCGAACAGATCCAAATCAAAACACAGGCACTTCCATACATAATGCAACTATAAAAGCTGCTGCTGATTTGGCTCCTGTGGTTGGTACCGTGAAAACCTACCTTGGGAGACCATGGAAAGAGTACTCAAAGACGGTTTATATGCAGTCTTTCATGGATAGTCTGATAGATCCTTCCGGTTGGCGTGAATGGAGTGGGAGTTTTGCCCTAAGCACCTTGTACTATGCAGAGTATAATAACACGGGACCTGGTTCAAACACCGCAAACCGAGTAACGTGGACTGGTTATCATGTTATCAATGCTGCAGCTAATTTTACAGTGTCTAATTTCTTGGACGGTGATAATTGGCTGCCTCAAACTGGCGTCCCATACGTGAGTGGATTGATATAG 1674 0.4325 MAFKNLSVLTLCVSLMLSFWASISIADNHAIVPPETICRSTVDPSSCKTVLANQNGNIFDYGRISVRKSLSQSRKFLDLVNSFLQDRSSLSLPTIRALEDCRFLAEQNFEYLSNALDAVNKASDVLPTFQAEEQHTMLSAVLTNEETCLEGLQTIASDQRVKSNLFSSLSDDTKLHSVSLALFTKGWVPERKISTSWFHNGRHLDFRNGHLPLKMSNRVRAIYDSARGHGRKLLQDSQSVVGSDIVVVSQDGSGNFTTINDAIAAAPNNTVASAGYFLIFVTQGVYQEYVSIDKNKKYLMMVGDGINRTIITGDHNVVDNFTTFNSATFAVVAQGFVAVNITFRNTAGPSKHQAVAVRNGADMSTFYSCSFEGYQDTLYTHSLRQFYRECDVYGTVDFIFGNAAVVFQACNMYPRLPLNGQFNAITAQGRTDPNQNTGTSIHNATIKAAADLAPVVGTVKTYLGRPWKEYSKTVYMQSFMDSLIDPSGWREWSGSFALSTLYYAEYNNTGPGSNTANRVTWTGYHVINAAANFTVSNFLDGDNWLPQTGVPYVSGLI 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0630 557 SUPERFAMILY Pectin lyase-like 244 555 IPR011050 -
Ssu4g0630 557 ProSitePatterns Pectinesterase signature 2. 392 401 IPR033131 -
Ssu4g0630 557 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 185 IPR035513 -
Ssu4g0630 557 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 36 185 IPR035513 -
Ssu4g0630 557 Pfam Pectinesterase 246 542 IPR000070 GO:0030599|GO:0042545
Ssu4g0630 557 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 16 555 - -
Ssu4g0630 557 Pfam Plant invertase/pectin methylesterase inhibitor 35 182 IPR006501 GO:0004857
Ssu4g0630 557 Gene3D - 241 556 IPR012334 -
Ssu4g0630 557 PANTHER PECTINESTERASE 16 555 - -
Ssu4g0630 557 CDD PMEI-like_3 36 187 - -
Ssu4g0630 557 SMART PMEI_2 29 182 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0630 Ssu-Chr4 9999363 10001247 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0630 13 557 Carbohydrate Esterase AT1G02810 59.756 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0630 K01051 - gmx:100813051 974.156