Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0629 ATGTATAACCCCATTGGTAGTAGAAGAACAGCACCCATGCTCTCTCACGTGCCCATTTTCTCCACGGTTTTTGTGCTACTCCTTTCTTCGTTAACCCATTTCAGCATCACCGCAAAAGCAACAAGAACCCCCCAAGAAACTAACCTTCATCTCCAAGTAGCCAACTCCACATGCGAGGGAACACTCTACCCAGACCTCTGCGTCTCAACCCTGGCCTCATTCCCAGATCTTACCTCAAAATCTGTTCCACAAATGATATGTTCCGTCGTCAACCACACCATATACGAGGTCACGTTGTCATCCTCCAACTGCAGCCGCCTCCGAAAGAAGCTCCCGAATCTTAACACACTCGAACAGAGAGCTCTTGATGACTGTCTCACTCTATTCGATGGCACCATTGAGGAGCTCAAAACCACCATCACCGATCTCTCCCAAAGCACAATAGGCTCCAAGCGTTACCACGACTCGCAGACTCTGCTAAGTGGCGCCATGACCAATTTGTACACGTGCCTGGAAGGCTTTGCCTTCAGTAAAGGGAACGTGAGGGACAGGATTCAGGAGAAGCTGTTTGAGATTTCACATCACGTTAGTAACTCGCTGGCCATGCTGAAGAAAGTGCCCGGAGTGAAGAAACCGTCCAAGAATGAGGCCTTCCCCGAATATGGTAAGATGAAATACGGGTTCCCGTCGTGGGTATCCCCCAAAGACCGAAAGTTGCTTCAAGCCGCGGTGAATGAAACCAAGTTCGATCTTGTTGTGGCCAAAGATGGCACCGGCAACTTCACCACTATAGGGGAAGCACTGGCCGCCGCTCCAAACTCCAGCACAACTAGATTTGTAATACACATAAAAGCCGGGGCATACTTCGAAAATGTGGAGGTGATAAGGAAGAAGACCAATCTGATGCTGGTCGGAGATGGAATTGGAATGACTGTTGTGAAGGCCGGTAGGAATGTTGTCGACGGCTGGACCACTTTCCAATCAGCCACTGTCGCTGTGGTTGGAGACGGATTCATAGCAAAGGATATAACCTTTGAGAACTCGGCTGGGCCAAGCAAACACCAAGCTGTGGCCCTAAGAAGCGGTGCTGACTTCTCAGCCTTCTATAAATGCAGCTTTGTTGCTTACCAAGACACTCTCTATGTCCACTCTCTGCGTCAATTTTATCGCGAATGCGACATTTATGGCACCATAGACTTCATCTTTGGCAATGCAGCAGTAGTGCTCCAGAACTGCAGCTTGTACGCACGCAAGCCTAATGAAAACCAGAAGAACTTGTACACCGCACAGGGCAGAGAAGACCCTAACCAAAACACTGGCATTTCCATCATGAACTGCAAGGTTGCAGCTGCTTCTGATTTAATCCCAGTCAAAACCTCGTTCAAGACTTACTTGGGTCGCCCTTGGAAAAAGTATTCGAGAACTGTTTATCTCAATTCTTACATGGAGGATCTGATAGACCCAGCAGGGTGGTTGGAATGGAATGGAACGTTTGCATTGGATACATTGTATTATGGGGAGTACAACAATAGCGGTCCGGGTTCAAATACAAGCGCCAGAGTTACGTGGCCTGGTTATAGGGTCATCACGAACTCCACTGAGGCAAGCCAGTTCACTCTTCGCCAGTTCATTCAAGGCAATGAATGGTTGAACTCCACCGGCATTCCATTCTTCTCTGATTTGAGTTGA 1689 0.4849 MYNPIGSRRTAPMLSHVPIFSTVFVLLLSSLTHFSITAKATRTPQETNLHLQVANSTCEGTLYPDLCVSTLASFPDLTSKSVPQMICSVVNHTIYEVTLSSSNCSRLRKKLPNLNTLEQRALDDCLTLFDGTIEELKTTITDLSQSTIGSKRYHDSQTLLSGAMTNLYTCLEGFAFSKGNVRDRIQEKLFEISHHVSNSLAMLKKVPGVKKPSKNEAFPEYGKMKYGFPSWVSPKDRKLLQAAVNETKFDLVVAKDGTGNFTTIGEALAAAPNSSTTRFVIHIKAGAYFENVEVIRKKTNLMLVGDGIGMTVVKAGRNVVDGWTTFQSATVAVVGDGFIAKDITFENSAGPSKHQAVALRSGADFSAFYKCSFVAYQDTLYVHSLRQFYRECDIYGTIDFIFGNAAVVLQNCSLYARKPNENQKNLYTAQGREDPNQNTGISIMNCKVAAASDLIPVKTSFKTYLGRPWKKYSRTVYLNSYMEDLIDPAGWLEWNGTFALDTLYYGEYNNSGPGSNTSARVTWPGYRVITNSTEASQFTLRQFIQGNEWLNSTGIPFFSDLS 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0629 562 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 55 206 IPR035513 -
Ssu4g0629 562 SUPERFAMILY Pectin lyase-like 248 559 IPR011050 -
Ssu4g0629 562 CDD PMEI-like_3 56 208 - -
Ssu4g0629 562 SMART PMEI_2 49 202 IPR006501 GO:0004857
Ssu4g0629 562 TIGRFAM PME_inhib: pectinesterase inhibitor domain 22 205 IPR006501 GO:0004857
Ssu4g0629 562 Gene3D - 244 561 IPR012334 -
Ssu4g0629 562 PANTHER PECTINESTERASE 20 559 - -
Ssu4g0629 562 Pfam Plant invertase/pectin methylesterase inhibitor 55 202 IPR006501 GO:0004857
Ssu4g0629 562 PANTHER PECTINESTERASE 20 559 - -
Ssu4g0629 562 Pfam Pectinesterase 250 547 IPR000070 GO:0030599|GO:0042545
Ssu4g0629 562 ProSitePatterns Pectinesterase signature 2. 394 403 IPR033131 -
Ssu4g0629 562 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 208 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0629 Ssu-Chr4 9971016 9975532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0629 78 561 Carbohydrate Esterase AT4G02320 57.143 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0629 K01051 - gmx:100813592 959.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0629 4 9971016 9975532 Ssu7g1986 7 39515797 39524552 PCT