Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0624 ATGGTTGAACCTGGTTCTATAATTCCCCTATCCTATACCTCATCTTTTTCCTCTGATGACCATACCTTTCGTACTATTATCTCCTCCTCCCACCAAAAATCATCACCCTCAAAGAAGACATGTGGTAGGCCCTTGGGCTCCAAGAATAAGCCAAAACCACCCCTCGTGATTAACCAAGGTAGCGAGGAAGCCCtaaaacctattttaattgAAGTCCCTAACAACTCTGATGTGATTGAGACAGTGGTCCAATTTGCTCGTCGCTACCAAGTTAGCATCACAATGCTAAGCGTGTCAGGCTCAATTTCTAATGTCACTCTCTGCCATACTCTTTCTGATACTTTTGCTTTCACTATTTATGGACCCTTCACTTTAATTTCCCTTACTGGCACCTACCTAAATAATAGCTCTTGTGCTGCTTCTTCATCTTTATCATCATCATCCAATCTTAACCTTTGTTCTTTTAGGATTTCCTTTTCTTCAATTTCTGGTCAAAGCTTTATTGGGGTTGTTGGAGAGAAAGCTATGGCAGCTAATGAGGTTACTGTGGTGGCTACTACTTTCAAGAACTCTCAAATTCACAAGGTCGGTATCAGTGATAGTGGTGAGGAAAGGGATAACAATAACCCTAATGAATGTAATCAAGGTGGCAACCAGAACATATCTTAG 669 0.4051 MVEPGSIIPLSYTSSFSSDDHTFRTIISSSHQKSSPSKKTCGRPLGSKNKPKPPLVINQGSEEALKPILIEVPNNSDVIETVVQFARRYQVSITMLSVSGSISNVTLCHTLSDTFAFTIYGPFTLISLTGTYLNNSSCAASSSLSSSSNLNLCSFRISFSSISGQSFIGVVGEKAMAANEVTVVATTFKNSQIHKVGISDSGEERDNNNPNECNQGGNQNIS 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0624 222 Gene3D - 65 206 - -
Ssu4g0624 222 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 30 217 - -
Ssu4g0624 222 MobiDBLite consensus disorder prediction 208 222 - -
Ssu4g0624 222 MobiDBLite consensus disorder prediction 27 57 - -
Ssu4g0624 222 SUPERFAMILY AF0104/ALDC/Ptd012-like 64 196 - -
Ssu4g0624 222 Pfam Plants and Prokaryotes Conserved (PCC) domain 66 190 IPR005175 -
Ssu4g0624 222 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 30 217 IPR014476 GO:0003680
Ssu4g0624 222 MobiDBLite consensus disorder prediction 27 42 - -
Ssu4g0624 222 ProSiteProfiles PPC domain profile profile. 62 211 IPR005175 -
Ssu4g0624 222 MobiDBLite consensus disorder prediction 197 222 - -
Ssu4g0624 222 CDD DUF296 66 133 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0624 Ssu-Chr4 9906765 9907433 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0624 38 210 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 32.967 2.56e-25 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0624 - - aprc:113857474 190.274