Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0623 ATGTGTGGCGGAGCAATCATCACGGAGTTCATCCCTCGCCACCGTTCCCGCAGCCTCACAGCCTCCGAAATCTGGCCCAACACATTCGGCAAGCGCAACGAATCGCACCTCCACGAATGCTCTCACCCTCAGCAGCACCAACAGCCAGAGTCACCCCAACCTCCCGCAGTGAAGAGGCAGAGGAAAAACATTTACAGAGGGATCAGGCAGCGGCCCTGGGGCAAATGGGCCGCGGAGATTCGCGACCCAAGAAAAGGGGTCCGTGTCTGGCTGGGCACCTTCAACACCGCCGAAGAAGCCGCCAGGGCCTACGACAGAGAGGCCCGAAAAATCCGCGGCATAAAGGCCAAAGTTAACTTCCCCAACGAGGACGACCACTACTCCACGCAAGCTCCCGGCAATCCTCTACCGCCCCTCTATCAACAGCAATACGGGTGCAAGAGCCTGAACTTGGAGTTCGGTTACGATCTGAACCAAACAGGGGTTTTCCCTTCTCAGGGTGTTATCAACGCCGAGCCGGTGTTGGGTTCCGCTGATGAGAATTGCGGGTACGGGTCGGGGTCCGAAGGAGCTTTTTCTGCCACGGGCTTCGCGGGTGGGGAAGCGGAAGTGAAAGAGTTAGGGGTTGAAAGCGAAGAGGCGAAGATCAAAGTGGATAAGCTTTCGGAGGAGTTGATGGCGTACGAGAATTACATGAGGTTTTATCAGATTCCGTACTATGATGCTCAATCGGCTCCGTCTAGTACGGTTCAGGAAAACGTGGTTGGTGATTTTTGGGACTTCGATGCTCCTCCCGAGGCCTCTCCAGCTCTCTGA 816 0.5613 MCGGAIITEFIPRHRSRSLTASEIWPNTFGKRNESHLHECSHPQQHQQPESPQPPAVKRQRKNIYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDREARKIRGIKAKVNFPNEDDHYSTQAPGNPLPPLYQQQYGCKSLNLEFGYDLNQTGVFPSQGVINAEPVLGSADENCGYGSGSEGAFSATGFAGGEAEVKELGVESEEAKIKVDKLSEELMAYENYMRFYQIPYYDAQSAPSSTVQENVVGDFWDFDAPPEASPAL 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0623 271 SUPERFAMILY DNA-binding domain 64 122 IPR016177 GO:0003677
Ssu4g0623 271 CDD AP2 64 122 IPR001471 GO:0003700|GO:0006355
Ssu4g0623 271 Gene3D AP2/ERF domain 64 122 IPR036955 GO:0003700|GO:0006355
Ssu4g0623 271 PANTHER EREBP TRANSCRIPTION FACTOR 42 143 - -
Ssu4g0623 271 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Ssu4g0623 271 Pfam AP2 domain 65 113 IPR001471 GO:0003700|GO:0006355
Ssu4g0623 271 MobiDBLite consensus disorder prediction 33 60 - -
Ssu4g0623 271 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Ssu4g0623 271 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Ssu4g0623 271 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Ssu4g0623 271 PANTHER DNA-BINDING DOMAIN 42 143 IPR044808 GO:0003700|GO:0009873
Ssu4g0623 271 Coils Coil 204 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0623 Ssu-Chr4 9890290 9891178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0623 1 122 AP2-EREBP Transcription Factor Family AT3G16770 53.676 5.29e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu4g0623 AP2 5.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0623 K09286 - gmx:100780763 325.094