Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0622 ATGGTTTCGCTGAAACTGCAGAAGCGGCTAGCTGCAAGCGTACTCAAGTGCGGCAGAGGAAAGGTCTGGCTTGACCCCAATGAAGTCAACGAAATCTCCATGGCCAATTCGAGGCAAAACATAAGGAAGCTGGTTAAGGATGGGTTTATTATCAGGAAACCCACCAAGATTCACTCTCGCTCACGTGCCCGTCGAATGAAGGAAGCCAAGAGGAAAGGGCGCCACTCTGGATATGGTAAGCGAAAGGGTACAAGGGAGGCAAGGCTTCCCACTAAAATCCTTTGGATGAGGAGAATGCGTGTGCTCAGACGCTTGCTCCGCAAGTACAGGGAATCTAAGAAGATTGACAAGCACATGTACCATGACATGTACATGAAGGTTAAGGGTAACGTTTTCAAGAACAAGAGGGTTTTAATGGAGAGCATTCACAAGTCCAAAGCTGAGAAAGCAAGAGAGAAGACCTTGTCTGATCAGTTTGAGGCCAAACGTGCCAAGAACAAGGCCAGCAGAGAAAGGAAAATTGCTCGGAGGGAGGAGCGATTGGCCCAAGGTCCTGGAGAAAAGTCATCAGCTGCACCCAGTGCTCCACCTGCTACAGCATCACAGCCAGCTCAGTGA 618 0.4951 MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERLAQGPGEKSSAAPSAPPATASQPAQ 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0622 205 Gene3D - 57 190 - -
Ssu4g0622 205 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Ssu4g0622 205 PANTHER RIBOSOMAL PROTEIN L19 1 204 - -
Ssu4g0622 205 MobiDBLite consensus disorder prediction 149 205 - -
Ssu4g0622 205 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Ssu4g0622 205 PANTHER 60S RIBOSOMAL PROTEIN L19 1 204 IPR039547 GO:0003723|GO:0003735|GO:0022625
Ssu4g0622 205 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Ssu4g0622 205 MobiDBLite consensus disorder prediction 57 79 - -
Ssu4g0622 205 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Ssu4g0622 205 MobiDBLite consensus disorder prediction 149 184 - -
Ssu4g0622 205 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Ssu4g0622 205 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Ssu4g0622 205 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Ssu4g0622 205 MobiDBLite consensus disorder prediction 57 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0622 Ssu-Chr4 9878730 9880424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0622 1 197 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 87.310 1.26e-126 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0622 K02885 - gmx:100499875 360.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0622 4 9878730 9880424 Ssu4g0622 4 9878730 9880424 ECH