Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0619 ATGTCCGGCATCGTCGAGCCTAACGGTGCCGTTTGTTACTATTCAGTGCTTGGGATTGGCAAACATTCCACCGATGACGAAATTCGATGTGCTTATCGTAAGCTGGCTCTGAAGTGGCATCCTGATAGGTGGATCAAGGACCCAAAGCTTGCACTAGAAGCCAAAAAGCGATTTCAGCACGTTCAAGAGGCTTATTCAGTGCTCTACGTGAACAAATTAAACTTATTCGTGCAGGATTTCTCATGGCATTTGGAACGAGTGTTATAA 267 0.4532 MSGIVEPNGAVCYYSVLGIGKHSTDDEIRCAYRKLALKWHPDRWIKDPKLALEAKKRFQHVQEAYSVLYVNKLNLFVQDFSWHLERVL 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0619 88 PRINTS DnaJ domain signature 32 47 IPR001623 -
Ssu4g0619 88 PRINTS DnaJ domain signature 53 73 IPR001623 -
Ssu4g0619 88 PRINTS DnaJ domain signature 14 32 IPR001623 -
Ssu4g0619 88 SMART dnaj_3 11 73 IPR001623 -
Ssu4g0619 88 Pfam DnaJ domain 13 69 IPR001623 -
Ssu4g0619 88 ProSiteProfiles dnaJ domain profile. 12 73 IPR001623 -
Ssu4g0619 88 CDD DnaJ 12 68 IPR001623 -
Ssu4g0619 88 PANTHER PUTATIVE, EXPRESSED-RELATED 7 68 - -
Ssu4g0619 88 Gene3D DnaJ domain 13 69 IPR036869 -
Ssu4g0619 88 PANTHER DNAJ HOMOLOG SUBFAMILY B MEMBER 6-LIKE 7 68 - -
Ssu4g0619 88 SUPERFAMILY Chaperone J-domain 12 68 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0619 Ssu-Chr4 9842776 9843164 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0619 12 68 C2H2 Transcription Factor Family AT1G74250 51.724 7.08e-13 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0619 - - pvu:PHAVU_001G210400g 123.635