Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0618 ATGGCGGCAGAGGCGGCGTTGTTCTTTTCTGTGGCATCAGTGGTGGAGGACGTGCTTCAGCAGCACGGTCCTCGCCTCAAAGATCTTGATTTGGAATCTAGAAAAGCAGAAGAAGCTgCATCAAGGAGATATGAAGCAGCGGGGTGGTTGAGAAAAATGGTTGGAGTTGTTGCAGCTAAAGATTTGCCAGCAGAGCCCTCCGAGGAAGAGTTTAGGCTTGGTTTAAGAAGTGGGATTATTCTctgtaatgttattaataaagttCAATCCGGAGCTGTACCCAAGGTTGTGGAGAGTCCTGTTGATTCTGCATTGATCCCTGATGGGACACCGTTAACGGCATATCAGTACTTTGAAAACGTGAGGAATTTCCTGGTGGCTGTCCAAGAAATTGGTCTTCCTACCTTTGAGGCATCTGATCTGGAACAAGGAGGAAAATCATCTAGGATTGTCAATTGCGTCTTGGCCCTGAAATCCTATAGTGAATGGAAAATGAACGGAGCAAATGGTGCGTGGAAATTTGGCGGAAATCTCAAACCCACTGTGTCTGCAAAATCTTTTGTGAGAAAAAACTCGGAGCCATTTACTAATTCCTTGTCAAGGACTTCATCTATCAATGATAAATCTCTCACTATTAATTCTGACGTTGAGTCTAATAAAATGTCTGGTTCTCATTCTTTGAGTGCGCTTGTTCGTGCAATTCTATCAGATAAGAAGCCAGAAGAAGTTCCAACGTTGGTTGAATCTGTTTTAAACAAGGTTGTAGAGGAGTTTGAGCAACGAATTGCAAGCCAAGGTGAACAGACAAAAGTAACTTCAAGAGATCCTGTTTCTCAAAGCAAGGGGTCTGCTATGCCAGATAAAAAGGGGGAGAAGAAGATTCATGTGGCAACAAAAAAGGAGGATTGCattcataaaaatcaagttgctgctatggtaacaaaaaaagagGGTCTCgttcaaaaaaatcaagttgCTGATGAGGAATCACAAAGGCAACTGTTGAAGCAGCAAATGCTCTTTGACCAGCAGCAAAGAGAAATTCAAGAGCTAAGGCATACTCTTCACACCACAAAAGCTGGTATGCAGTTCATGCAAATGAAATTTCACGAGGAGTTCTCCAATCTTGgCGTGCACATTCATGGCTTAGCTAATGCTGCTTCTGGATATCATAGAGTTCTCGAAGAAAATCGCAAACTATACAATCAAGTCCAGGATCTTAAGGGAAGTATTAGGGTTTACTGTCGAGTAAGACCCTTCTTTCCTGGACAATCAAACCATTTGAGCGCAGTGGAAAATATAGAAGATggaattataacaattaatattccTTCAAAGAATGGGAAGGGGCGCAGGTCCTTCAACTTTAACAAAGTCTTTGGACCATCTGCAAGCCAAGCTGAGGTCTTCTTAGATATGCAGCCACTCGTTAGATCTGTTCTTGATGGTTATAATGTTTGCATATTTGCATATGGCCAAACAGGATCAGGAAAAACTTACACTATGACTGGACCCAAAGAGATCACAGAGAAAAGCCAAGGTGTAAATTACAGGGCTCTAAGCGATTTGTTTCTTATAGCAGATCAAAGAAGGGACACTTTCCACTATGACGTTTCTGTTCAAATGATTGAGATTTATAATGAGCAAGTCAGGGATCTGCTGGTCACTGATGGAACAAACAAAAGATATCCTTTTACCaAAATTCGTAGTAGTTCTCAAAAAGGACTCAGCGTGCCAGATGCCAGCCTTGTCCATGTATCATCAACTATTGATGTTATTGAACTAATGAACCTTGGGCAAAGGAACCGTGCAGTTGGAGCAACAGCCCTTAATGACCGCAGTAGCCGATCTCATAGTTGCTTGACTGTTCATGTTCAAGGAAGAGATTTGACATCTGGAGCTATCCTTCGTGGATGCATGCATTTGGTTGACTTGGCAGGAAGTGAAAGGGTAGATAAATCTGAGGCCACAGGAGATAGACTAAAAGAGGCACAGCATATTAACAAATCTCTTTCAGCTTTGGGAGATGTCATTGCTTCCCTAGCTCAGAAAAACTCACACGTTCCTTATAGAAATAGTAAACTCACACAACTACTCCAAGATTCACTTGGAGGACAAGCTAAGACACTAATGTTTGTTCACATAAGTCCAGAGAGTGATGCTACTGGAGAAACAATTAGTACCTTAAAATTTGCTGAAAGAGTTGCCACAGTTGAACTTGGTGCTGCTCGAGTAAACAAAGATAGTGTGGATGTTAAGGAACTCAAAGAACAGATTGCCAGCCTTAAGGCAGCACTGGCAAGAAAGGAAGGAGAATCAGAACATTCTTTTTCCAGCAGCTCCGAAAAATACAGGACAAAGGCTAGTGAGCTATCACCTTATATGAAACAGGGAGATCCTGACACTGGGGATCAACTTGGATGCAGGCGACCAATGGTTGATGTTGGCAACATAGAACTTCAGAGTAATACCACAGTGAGGCACAAAACTCAGAGCTTTGATTTTGATGAGATATCAGCAAATTCACCACCGTGGCCCCCAGTGAATAATAGTCTTGGACAAAATTATGGGGAGGATGAGAAAGAAACTGTTTCTGGAGAATGGGTCGACAAGGTCATGGTCAACAAGCAAGATGTAAACAAAACTGAGAACCTCTTGGGGTGTTGGCAAGCAAGCAATGGGAACTTATCTGAGGCCTTTTATCAGAAATATCTCAAAGATTCTTCCAAAATGTACTCAGAACAATCCTATAATATGTTCATAGGAGGCAACCAGTTTAACATTGCGGGTTCAGATGGCACGGATGAGCTTGATGCTGCAACGAGTGATTCCTCGGAACCTGACTTACTTTGGCAATTTAATCATTCCAAACTTAGCAGCATGACCAATGGAATTGGATCAAAGAAATCTATCTCAAAGGCAGCAAAAAGCCCAGAGTTGAGCAAGAATGCTGTTCATTCTTCTCCTCTAGGTCCTTCACCTTCATTGAAACAATCAAATTCACATCGAACAGCAAGGCATCCAGCTCCAGTTGACGTGAAACGTAGAACTGGGAGTAGAAAATAA 3066 0.4106 MAAEAALFFSVASVVEDVLQQHGPRLKDLDLESRKAEEAASRRYEAAGWLRKMVGVVAAKDLPAEPSEEEFRLGLRSGIILCNVINKVQSGAVPKVVESPVDSALIPDGTPLTAYQYFENVRNFLVAVQEIGLPTFEASDLEQGGKSSRIVNCVLALKSYSEWKMNGANGAWKFGGNLKPTVSAKSFVRKNSEPFTNSLSRTSSINDKSLTINSDVESNKMSGSHSLSALVRAILSDKKPEEVPTLVESVLNKVVEEFEQRIASQGEQTKVTSRDPVSQSKGSAMPDKKGEKKIHVATKKEDCIHKNQVAAMVTKKEGLVQKNQVADEESQRQLLKQQMLFDQQQREIQELRHTLHTTKAGMQFMQMKFHEEFSNLGVHIHGLANAASGYHRVLEENRKLYNQVQDLKGSIRVYCRVRPFFPGQSNHLSAVENIEDGIITINIPSKNGKGRRSFNFNKVFGPSASQAEVFLDMQPLVRSVLDGYNVCIFAYGQTGSGKTYTMTGPKEITEKSQGVNYRALSDLFLIADQRRDTFHYDVSVQMIEIYNEQVRDLLVTDGTNKRYPFTKIRSSSQKGLSVPDASLVHVSSTIDVIELMNLGQRNRAVGATALNDRSSRSHSCLTVHVQGRDLTSGAILRGCMHLVDLAGSERVDKSEATGDRLKEAQHINKSLSALGDVIASLAQKNSHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPESDATGETISTLKFAERVATVELGAARVNKDSVDVKELKEQIASLKAALARKEGESEHSFSSSSEKYRTKASELSPYMKQGDPDTGDQLGCRRPMVDVGNIELQSNTTVRHKTQSFDFDEISANSPPWPPVNNSLGQNYGEDEKETVSGEWVDKVMVNKQDVNKTENLLGCWQASNGNLSEAFYQKYLKDSSKMYSEQSYNMFIGGNQFNIAGSDGTDELDAATSDSSEPDLLWQFNHSKLSSMTNGIGSKKSISKAAKSPELSKNAVHSSPLGPSPSLKQSNSHRTARHPAPVDVKRRTGSRK 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0618 1021 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 410 770 IPR027417 -
Ssu4g0618 1021 CDD KISc_C_terminal 408 740 - -
Ssu4g0618 1021 SUPERFAMILY Calponin-homology domain, CH-domain 38 171 IPR036872 -
Ssu4g0618 1021 Pfam Calponin homology (CH) domain 41 162 IPR001715 GO:0005515
Ssu4g0618 1021 MobiDBLite consensus disorder prediction 263 280 - -
Ssu4g0618 1021 SMART kinesin_4 408 746 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu4g0618 1021 ProSiteProfiles Calponin homology (CH) domain profile. 40 162 IPR001715 GO:0005515
Ssu4g0618 1021 MobiDBLite consensus disorder prediction 1007 1021 - -
Ssu4g0618 1021 MobiDBLite consensus disorder prediction 263 292 - -
Ssu4g0618 1021 Pfam Kinesin motor domain 416 737 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu4g0618 1021 Gene3D - 32 162 IPR036872 -
Ssu4g0618 1021 MobiDBLite consensus disorder prediction 962 1005 - -
Ssu4g0618 1021 ProSiteProfiles Kinesin motor domain profile. 410 738 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu4g0618 1021 PANTHER KINESIN-LIKE PROTEIN KLP-3 2 1018 - -
Ssu4g0618 1021 PRINTS Kinesin heavy chain signature 639 657 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu4g0618 1021 PRINTS Kinesin heavy chain signature 483 504 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu4g0618 1021 PRINTS Kinesin heavy chain signature 688 709 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu4g0618 1021 PRINTS Kinesin heavy chain signature 608 625 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu4g0618 1021 Gene3D Kinesin motor domain 405 779 IPR036961 -
Ssu4g0618 1021 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 2 1018 - -
Ssu4g0618 1021 SMART ch_5 42 160 IPR001715 GO:0005515
Ssu4g0618 1021 MobiDBLite consensus disorder prediction 962 1021 - -
Ssu4g0618 1021 Coils Coil 745 772 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0618 Ssu-Chr4 9833201 9839215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0618 398 774 Calmodulin-binding Proteins AT5G65930 41.099 2.13e-74 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0618 K10406 - gmx:100795476 1797.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0618 4 9833201 9839215 Ssu4g0618 4 9833201 9839215 ECH
Ssu4g0618 4 9833201 9839215 Ssu7g2547 7 50148707 50152690 PCT