Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0617 ATGTCCACCGACACACACGCCGCGCCTAATATCAATCCCAAGGGCCTCCTCTGCAATGTCGCTGCCGGTGCTTCCGCCGGGGTTATTGCTGCTACATTTGTGTGTCCTTTAGATGTCATCAAAACTAGGTTTCAGGTTCATGGTGTACCGCAGCTCGCAAATGGAAGTGTTAAAGGCAGCATAATAGTTGCTagtttcaaacaaatttttcaCAAGGAAGGGTTACGAGGCATGTATCGTGGGCTTGCTCCCACTATGCTGGCTTTACTTCCGAACTGGGCGGTTTATTTTACTGCGTATGATCAGCTTAAGAGCCTTCTTTCTAATGATGAAAGCCATCATCTTTCAATTGGAGCCAATATGATAGCTGCTTCTGGTGCTGGAGCTGTAACTACCATGTTTACAAATCCCCTTTGGGTTGTCAAGACTAGACTCCAAACCCAGGGAATAAGACCAGGTGTTGTGCCATATAGGAGTACACTATCTGCGTTGAGGAGAATTGCACATGAGGAGGGCATTCGGGGGTTGTACAGTGGCCTTATACCTGCTCTGGCTGGTATCAGTCATGTTGCCATACAATTTCCCACATATgagtcaataaaattttatttggcaAATCAAGATGACACAACAATGGATAAACTTGGTGCACGTGATGTTGCAATTGCATCATCAGTTTCCAAAATTTTTGCATCCACATTGACATATCCTCATGAGGTTGTACGTTCCAGACTGCAAGAACAAGGGCATCATTCAGAGAAACGGTACTCTGGTGTGATTGACTGTATAAGAAAGGTTTTTCAACAAGAAGGTGTACCAGGATTTTATAGAGGTTGTGCCACCAACCTTTTGAGGACAACGCCAGCTGCTGTAATCATATTCACCAGCTTTGAAATGATACACCGATTTCTTGTTTCACTTTTTCCTTCTGATCCACAGTCTCATATTTTGTGA 954 0.4277 MSTDTHAAPNINPKGLLCNVAAGASAGVIAATFVCPLDVIKTRFQVHGVPQLANGSVKGSIIVASFKQIFHKEGLRGMYRGLAPTMLALLPNWAVYFTAYDQLKSLLSNDESHHLSIGANMIAASGAGAVTTMFTNPLWVVKTRLQTQGIRPGVVPYRSTLSALRRIAHEEGIRGLYSGLIPALAGISHVAIQFPTYESIKFYLANQDDTTMDKLGARDVAIASSVSKIFASTLTYPHEVVRSRLQEQGHHSEKRYSGVIDCIRKVFQQEGVPGFYRGCATNLLRTTPAAVIIFTSFEMIHRFLVSLFPSDPQSHIL 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0617 317 Pfam Mitochondrial carrier protein 115 206 IPR018108 -
Ssu4g0617 317 Pfam Mitochondrial carrier protein 221 305 IPR018108 -
Ssu4g0617 317 Pfam Mitochondrial carrier protein 15 110 IPR018108 -
Ssu4g0617 317 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 1 316 IPR044712 GO:0006862|GO:0055085
Ssu4g0617 317 ProSiteProfiles Solute carrier (Solcar) repeat profile. 215 303 IPR018108 -
Ssu4g0617 317 ProSiteProfiles Solute carrier (Solcar) repeat profile. 115 203 IPR018108 -
Ssu4g0617 317 PANTHER NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1, CHLOROPLASTIC 1 316 - -
Ssu4g0617 317 Gene3D Mitochondrial carrier domain 113 306 IPR023395 -
Ssu4g0617 317 Gene3D Mitochondrial carrier domain 3 112 IPR023395 -
Ssu4g0617 317 ProSiteProfiles Solute carrier (Solcar) repeat profile. 14 106 IPR018108 -
Ssu4g0617 317 SUPERFAMILY Mitochondrial carrier 15 299 IPR023395 -
Ssu4g0617 317 PRINTS Mitochondrial carrier protein signature 19 32 IPR002067 GO:0055085
Ssu4g0617 317 PRINTS Mitochondrial carrier protein signature 224 246 IPR002067 GO:0055085
Ssu4g0617 317 PRINTS Mitochondrial carrier protein signature 81 101 IPR002067 GO:0055085
Ssu4g0617 317 PRINTS Mitochondrial carrier protein signature 130 148 IPR002067 GO:0055085
Ssu4g0617 317 PRINTS Mitochondrial carrier protein signature 32 46 IPR002067 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0617 Ssu-Chr4 9804630 9809482 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0617 1 317 Chloroplast and Mitochondria Gene Families AT2G47490 73.817 4.31e-164 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0617 K15115 - gmx:100500213 587.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0617 4 9804630 9809482 Ssu4g0617 4 9804630 9809482 ECH