Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0614 ATGGCGACGAGAAATCGAACTGTAGAGTTCAGGAAGCACAGAGACGCCGTGAAGAGCATGCGCGCTCCTCTCTCCTCGTCAGCGTCTGCTTCCACCGGTCCCGTTATCGAAATGGTTAGCTCTTCGCTTCTTCGTTCCAATCGATCCTCCTACGCTCCTCTAAGCACCGAGGACCCTGGTCCAGCCACCTCTAGGGATGCATATACTGTGGGGTTGCCGCCGTCTTGGGTGGATGATTCTGAAGAACTAGCTACGAATATACAACGTGCTCGGATTAAAATTTCCGAGTTAACCAAAGCTCATGCGAAGGCTTTGATGCCTTCCTTTGGTGATGGCAAAGACGATCAGCGACATATTGAGACTCTCACCCAGGAAATTACATCTCTCCTCAGAAAGTCTGAAGTGAGGCTAAAAAGACTTTCTGCTGCTGGTGGATCTTCTGAGGATTCTAATGTCAGAAAAAATGTACAGCGTTCCCTTGCTACAGACCTTCAGAACCTATCAATGGATCTCCGGCGAAAACAGTCAGCATATTTGAAACATTTGCAGCAGCAAAAAGAGGGTTATGATGGGGTTGACTTGGAGATGAACTTTAACGGGAGTAAATTTGGATTGCACCATGATGAATTCAGTGATGtgGGTTTTGGTGAAGAGCAAATGACAAAGCTAAAGAAAAGTGAGCAGTTCTCTGAGGAAAGGGAAAGAGAGATTGAACAGGTTGCTAAATCAGTCCATGAACTTGCTCAAATCATGAAGGATCTCTCCGTTCTTGTGATAGACCAGGGAACAATTGTGGATAGAATTGACTACAACATTCAGAGTGTTGCTACGAACGTTGAAGAGGGCTTTAAGCAGTTGCAAAAGGCAGAGAGAACGCAGAAAAAAGGAGGGATGGTTATGTGTGCAACGGTGCTTGTTATAATGTGCTTTATCATGCTAGTTCTCTTGATACTCAAGGAGATCCTCTTCTAG 972 0.4547 MATRNRTVEFRKHRDAVKSMRAPLSSSASASTGPVIEMVSSSLLRSNRSSYAPLSTEDPGPATSRDAYTVGLPPSWVDDSEELATNIQRARIKISELTKAHAKALMPSFGDGKDDQRHIETLTQEITSLLRKSEVRLKRLSAAGGSSEDSNVRKNVQRSLATDLQNLSMDLRRKQSAYLKHLQQQKEGYDGVDLEMNFNGSKFGLHHDEFSDVGFGEEQMTKLKKSEQFSEEREREIEQVAKSVHELAQIMKDLSVLVIDQGTIVDRIDYNIQSVATNVEEGFKQLQKAERTQKKGGMVMCATVLVIMCFIMLVLLILKEILF 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0614 323 Gene3D - 73 281 - -
Ssu4g0614 323 PANTHER SYNTAXIN OF PLANTS PROTEIN 1 318 - -
Ssu4g0614 323 SUPERFAMILY t-snare proteins 72 282 IPR010989 GO:0016020|GO:0016192
Ssu4g0614 323 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 227 289 IPR000727 -
Ssu4g0614 323 PANTHER SYNTAXIN 1 318 IPR045242 -
Ssu4g0614 323 SMART SynN_4 67 183 IPR006011 GO:0016020
Ssu4g0614 323 Coils Coil 80 100 - -
Ssu4g0614 323 Pfam SNARE domain 263 315 IPR000727 -
Ssu4g0614 323 CDD SNARE_syntaxin16 231 288 - -
Ssu4g0614 323 ProSitePatterns Syntaxin / epimorphin family signature. 233 272 IPR006012 GO:0005484|GO:0006886|GO:0016020
Ssu4g0614 323 SMART tSNARE_6 222 289 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0614 Ssu-Chr4 9778688 9783483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0614 1 323 SNARE and Associated Proteins AT5G26980 69.207 8.71e-159 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0614 K08489 - gmx:100803629 545.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0614 4 9778688 9783483 Ssu7g1770 7 36177715 36182404 ECH
Ssu4g0614 4 9778688 9783483 Ssu4g0614 4 9778688 9783483 ECH