Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0606 ATGGCAAGGCTTACATTCATAGACAAAAGAAGCATGTCTGATAACACTCACACCTCGCCACCAAAACTATTCGGTTTCCCACTAACAGAGCAGGAGGAATTTGCAGAAAGGAAATTCGATGTTGGAGAAGACAGAAAATTCAGGTGCCACTACTGCAGGCGAGTATTCGGAAACTCGCAGGCCCTAGGGGGCCACCAAAACGCTCACAAGAAAGAGCGCCAGAGGGCGAGGCGTTTCCAAATCCACAGTGACCATAGACGCTCCATAGCAATAGCATCGCCTCCTTCTGTTCTCACCTCACATGCAATAAGATCGTCAGTACCGCACCCACCAGTTACAGTTACAGTACCCTCCGTTTACTTACAGGGCCCTCCTAGAGCCACTACTGTACCCATCTTCGATCCTCGTCAACAACAATTGCAATCCAGCACAAAGCACTTCCCATCACGGCCCATTTTGATTCCTTTTCAGCTTTATGCGTCACCCACTGTACTGCAGTCTGCTCCTACTGTCCGTGATTTTTCTGCAGAGAGGGAAGTGGGCGTTAATGTTGATGTCCATCTCAAATTATAA 573 0.4834 MARLTFIDKRSMSDNTHTSPPKLFGFPLTEQEEFAERKFDVGEDRKFRCHYCRRVFGNSQALGGHQNAHKKERQRARRFQIHSDHRRSIAIASPPSVLTSHAIRSSVPHPPVTVTVPSVYLQGPPRATTVPIFDPRQQQLQSSTKHFPSRPILIPFQLYASPTVLQSAPTVRDFSAEREVGVNVDVHLKL 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0606 190 ProSiteProfiles Zinc finger C2H2 type domain profile. 47 74 IPR013087 -
Ssu4g0606 190 Gene3D Classic Zinc Finger 31 93 - -
Ssu4g0606 190 ProSitePatterns Zinc finger C2H2 type domain signature. 49 69 IPR013087 -
Ssu4g0606 190 PANTHER ZINC FINGER PROTEIN 5 9 190 IPR044299 GO:0010090
Ssu4g0606 190 MobiDBLite consensus disorder prediction 1 22 - -
Ssu4g0606 190 SUPERFAMILY beta-beta-alpha zinc fingers 44 74 IPR036236 -
Ssu4g0606 190 PANTHER ZINC FINGER PROTEIN 6-LIKE 9 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0606 Ssu-Chr4 9693493 9694065 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0606 20 93 C2H2 Transcription Factor Family AT5G06650 43.820 5.01e-17 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu4g0606 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0606 - - gmx:100806818 229.95