Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0603 ATGGGAAGGGCTCCTTGTTGTGAGAAAGTGGGATTGAAGAAGGGGAGGTGGACAGCGGAGGAGGACGAAATTTTGACCAAGTTCATTCAGGCCAATGGAGAAGGTTCCTGGAGGTCATTGCCAAAAAATGCAGGATTGTTAAGATGTGGGAAGAGTTGCAGGTTGAGGTGGATTAATTATCTGAGAGCTGATCTCAAAAGAGGGAACTTTTCCGTTGAGGAGGAAAGGATCATTGTGAAGTTGCACGCCTCGTTTGGCAACAGGTGGTCGTTGATAGCAAGTCACTTGCCCGGAAGAACAGACAACGAGATAAAAAACTACTGGAACTCTCACCTGAGCAGGAAAATCTACACTTTCCGAGGGGCaagtaataaagaaataattaccGTACCTCCCAAGCGGAAACGCGGCAGAATCAGCCGGTGGGCCATGAAGAAGAACAAAAGTTATGCCCAAAGGGGTACTGAACAAAGCCCTAAACAAATTGACACTCATCAGAATAACGAAGCAGTTCCTCTGCCACCCACCCGGACACTTGAGAGCGAGAATTTGTCCACTAATGTAATGGATTTCATGGTTTTGGACCCCGAAAACGAGGAACTAGTTGATGGGTCGAGTCCTGGTGCCCaccacaaagaaaataatagtacTACTCAAGAAGGAAACATAGGTACTATGTTGGTACAATGCCTTGACGGTGAGAAAGAAATAAACGACGACATATTGGTACCGTGTGAGCAAGCTATTAATGGAGGAGAGGTTAATGATATCACGGACAATTGCTGGCTGGAAACAAATGGGGGTTTGTCCCTTTTTGGTGAAGAGAGAAAGGGCATTGATGTGGTTGGAAATGAAAGAGGTGACACGTGTACCAGCATAATGGTGTCGAGTGACGAGGACCGAGAGTGTAGCGTGAACCATTACCACAGTTTGAATAGGGAGGGTGGGGAGTTACATTCCTCCTCTTCCATGGCTTCGGGTTTAGAAGATGATAACTGGGACTGGGAAAGCGTGGTGTGGTGGGATCATAAGAATGAGTTAGTGTCATGGGAGCACCATGAAAACCTGCTGACTTGGCCGTGGGAAGATGAAGACTGGGAAAAGGATTTTCAAAGCTTTGGAGAGATTCATCCTGAGACACAAAATGCTATGCTTGATTGGTTTCTCCCTTGA 1173 0.4527 MGRAPCCEKVGLKKGRWTAEEDEILTKFIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNFSVEEERIIVKLHASFGNRWSLIASHLPGRTDNEIKNYWNSHLSRKIYTFRGASNKEIITVPPKRKRGRISRWAMKKNKSYAQRGTEQSPKQIDTHQNNEAVPLPPTRTLESENLSTNVMDFMVLDPENEELVDGSSPGAHHKENNSTTQEGNIGTMLVQCLDGEKEINDDILVPCEQAINGGEVNDITDNCWLETNGGLSLFGEERKGIDVVGNERGDTCTSIMVSSDEDRECSVNHYHSLNREGGELHSSSSMASGLEDDNWDWESVVWWDHKNELVSWEHHENLLTWPWEDEDWEKDFQSFGEIHPETQNAMLDWFLP 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0603 390 Gene3D - 69 116 - -
Ssu4g0603 390 CDD SANT 69 112 IPR001005 -
Ssu4g0603 390 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ssu4g0603 390 MobiDBLite consensus disorder prediction 146 178 - -
Ssu4g0603 390 CDD SANT 16 61 IPR001005 -
Ssu4g0603 390 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 364 - -
Ssu4g0603 390 MobiDBLite consensus disorder prediction 200 220 - -
Ssu4g0603 390 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ssu4g0603 390 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Ssu4g0603 390 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ssu4g0603 390 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Ssu4g0603 390 SMART sant 66 114 IPR001005 -
Ssu4g0603 390 SMART sant 13 63 IPR001005 -
Ssu4g0603 390 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Ssu4g0603 390 PANTHER MYB TRANSCRIPTION FACTOR 2 364 - -
Ssu4g0603 390 MobiDBLite consensus disorder prediction 150 178 - -
Ssu4g0603 390 Gene3D - 11 67 - -
Ssu4g0603 390 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0603 Ssu-Chr4 9661952 9667119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0603 1 182 MYB Transcription Factor Family AT5G49330 58.768 1.14e-72 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu4g0603 Myb_DNA-binding 4.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0603 K09422 - gmx:100817316 407.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0603 4 9661952 9667119 Ssu4g0603 4 9661952 9667119 ECH
Ssu4g0603 4 9661952 9667119 Ssu7g1957 7 39034130 39038565 PCT