Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0601 ATGCGCTCTCTGCTATTCTCTCAACGCCATTGCCGGGTAATATTGCTCTCTTCTTTAAACAACAACGCACAGCGCACACTTGATATGTCGTGCATTGCACTTTGCTTATGTATGTGCATTTTCGTTTGGACGTGTTGCAGAAAGAGCTATTACGATATACTTCAAGTGTCTAAGGGTGCATCGGACGAGCAGATAAAGAGGGCGTATAGGAAGCTGGCATTGAAATACCATCCTGATAAGAACCAGGGCAATGAAGAAGCTAATAAGAGATTTGCTGAGATTAACAATGCGTATGAAGTGTTGTCGGATAGCGAGAAGAGGGGTATTTATGACAGGTACGGTGAAGAGGGTTTGAAGCAGCATGCTGCCAGTGGAGGCAGAGGTGGTGGAATGGGAATGAACATCCAAGATATTTTTAGCTCTTTCTTTGGTGGGGGATCAatggaggaagaagagaaaattgTGAAAGGAGATGATGTGGTTGTTGAACTGGATGCAACACTTGAAGATTTATACATGGGGGGTTCCTTGAAGGTTTGGAGGGAAAAAAATGTACTAAAGTCAGCACCTGGGAAAAGACGCTGTAACTGTAGAAATGAGGTTTATCACAAGCAAATTGGGCCTGGGATGTTTCAACAGATGACAGAGCAGGTCTGTGAGCAATGTCCTAACGTCAAATACGTAAGGGAGGGGTATTTCATCACTGTTGATATTGAGAAAGGCATGCAAGATGGCCAGGAGGTGCTATTTTATGAGGACGGTGAGCCCATAATTGATGGAGAATCTGGAGATTTAAGGTTTCGTATCCAAACTGCACCTCATGAACTCTTCAGAAGAGAAGGCAATGACTTGCACACTACTGTCACTATAACTCTGGTTCAAGCTCTTGTTGGTTTTGAGAAAACCATTAAACACCTAGATGAGCGTCTAGTGGACATAAGCACAAAGGAAATCACAAAGCCAAAGCAGGTGAGGAAGTTCAAAGGGGAGGGTATGCCATTGCATATGAGCAACAAGAAAGGAGATCTTTACGTCACTTTTGAGGTTCTATTCCCCACGTCACTAACGGAGGAGCAGAAAACAAAGATCAAAGCAGTTCTCGGTTAG 1107 0.4291 MRSLLFSQRHCRVILLSSLNNNAQRTLDMSCIALCLCMCIFVWTCCRKSYYDILQVSKGASDEQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSEKRGIYDRYGEEGLKQHAASGGRGGGMGMNIQDIFSSFFGGGSMEEEEKIVKGDDVVVELDATLEDLYMGGSLKVWREKNVLKSAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCEQCPNVKYVREGYFITVDIEKGMQDGQEVLFYEDGEPIIDGESGDLRFRIQTAPHELFRREGNDLHTTVTITLVQALVGFEKTIKHLDERLVDISTKEITKPKQVRKFKGEGMPLHMSNKKGDLYVTFEVLFPTSLTEEQKTKIKAVLG 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0601 368 SMART dnaj_3 48 106 IPR001623 -
Ssu4g0601 368 ProSiteProfiles dnaJ domain profile. 49 114 IPR001623 -
Ssu4g0601 368 SUPERFAMILY HSP40/DnaJ peptide-binding domain 155 278 IPR008971 GO:0006457|GO:0051082
Ssu4g0601 368 Coils Coil 84 104 - -
Ssu4g0601 368 PANTHER BNAA09G39960D PROTEIN 29 367 - -
Ssu4g0601 368 Pfam DnaJ domain 50 111 IPR001623 -
Ssu4g0601 368 ProSitePatterns Nt-dnaJ domain signature. 91 110 IPR018253 -
Ssu4g0601 368 Gene3D - 152 273 - -
Ssu4g0601 368 SUPERFAMILY HSP40/DnaJ peptide-binding domain 277 361 IPR008971 GO:0006457|GO:0051082
Ssu4g0601 368 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 29 367 IPR044713 GO:0006457|GO:0030544
Ssu4g0601 368 Pfam DnaJ C terminal domain 161 352 IPR002939 -
Ssu4g0601 368 CDD DnaJ 50 103 IPR001623 -
Ssu4g0601 368 Gene3D DnaJ domain 46 151 IPR036869 -
Ssu4g0601 368 PRINTS DnaJ domain signature 86 106 IPR001623 -
Ssu4g0601 368 PRINTS DnaJ domain signature 106 125 IPR001623 -
Ssu4g0601 368 PRINTS DnaJ domain signature 69 84 IPR001623 -
Ssu4g0601 368 PRINTS DnaJ domain signature 51 69 IPR001623 -
Ssu4g0601 368 SUPERFAMILY Chaperone J-domain 46 147 IPR036869 -
Ssu4g0601 368 CDD DnaJ_C 158 355 - -
Ssu4g0601 368 Gene3D - 274 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0601 Ssu-Chr4 9642510 9646040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0601 47 113 C2H2 Transcription Factor Family AT1G74250 40.278 1.56e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0601 K09517 - gmx:100807885 598.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0601 4 9642510 9646040 Ssu4g0601 4 9642510 9646040 ECH