Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0593 ATGGCAGAGGTTGTCTTGCTAGTCGATGATTTGAAATTACTTTCTGGGATTCCTCGCTGTAGAATATGTCATGAAGAAGAGTTTGAAAGCTCAGAAAGCTTGGAAGCACCTTGTGCTTGTTCTGGGACCGTTAAGTTTGCTCATAGAGATTGCATACAGAGATGGTGCAACGAGAAAGGAAATACAACCTGTGAAATATGTCTCCAGCAATATGAACCCGGATATACAGCTCCGCCAAAGAAGTctaagataaatgatgaagcaATGTCTATTAGgGAGGAGCAAGAACCGTCAGACGCAAGAATAGAGATTATGGTTGAAGGAGTTGCAATAGAAAGCGATAACTCTGAATGCAGCTCTGCCGCTGACAGAAGCGCGTCTTGCTGTCGATCACTAGCAATAGCTTTTACACTAGTCTTACTCGTAAGACATCTTTTCGCAGTGCTTACAAATGGAACAGAAGTTTACCCATTTACATTACTTACTGTGATTATATTAAAGGCTAGCGGAATTATTATACCCatgtacataattattaagattATCGGAGCCATTCAGAACTATCAAGATTCTGACTATGACACGTCAATGTCTGACGAAGATGACGAAAATGAGATACAACACAACGTGAATTTAAGACATTCATAG 648 0.3843 MAEVVLLVDDLKLLSGIPRCRICHEEEFESSESLEAPCACSGTVKFAHRDCIQRWCNEKGNTTCEICLQQYEPGYTAPPKKSKINDEAMSIREEQEPSDARIEIMVEGVAIESDNSECSSAADRSASCCRSLAIAFTLVLLVRHLFAVLTNGTEVYPFTLLTVIILKASGIIIPMYIIIKIIGAIQNYQDSDYDTSMSDEDDENEIQHNVNLRHS 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0593 215 SUPERFAMILY RING/U-box 18 72 - -
Ssu4g0593 215 SMART ringv_2 19 68 IPR011016 GO:0008270
Ssu4g0593 215 MobiDBLite consensus disorder prediction 193 215 - -
Ssu4g0593 215 CDD RING_CH-C4HC3_MARCH 20 67 - -
Ssu4g0593 215 Pfam Protein of unknown function (DUF3675) 73 182 IPR022143 -
Ssu4g0593 215 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Ssu4g0593 215 ProSiteProfiles Zinc finger RING-type profile. 20 67 IPR001841 -
Ssu4g0593 215 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 1 203 - -
Ssu4g0593 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 77 IPR013083 -
Ssu4g0593 215 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 203 IPR033275 -
Ssu4g0593 215 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0593 Ssu-Chr4 9506198 9508354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0593 20 67 C3H Transcription Factor Family AT2G37950 42.857 1.26e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0593 - - gmx:100802379 345.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0593 4 9506198 9508354 Ssu4g0593 4 9506198 9508354 ECH
Ssu4g0593 4 9506198 9508354 Ssu7g1946 7 38837501 38840458 PCT