Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0588 ATGACTGTTCATTTAAGAGGAGAACTCACAAGAAAGGTGGCTCCAGGTGATGTGGTTGAATTATCTGGGATTTTTCTTCCTATACCTTACACTGGTTTTCGAGCAATGCGTGCAGGCTTAGTTGCTGACACTTACTTAGAGGTCATGTCTGTAACtcatttcaagaaaaaatatgaagaATACGAACTTAGAGGAGATGAGGAAGAGCTCATTGCACAATTAGCAGAGGATGGTGACATCTACAACAAATTGGCACGATCACTTGCTCCTGAAATTTTTGGGCATGACGACATTAAAAAAGCACTGCTTCTTCTCCTTGTTGGTGCTCCCCATCGGAAGTTGAAAGATGGAATGAAGATTAGAGGAGATTTACATATATGTTTGATGGGTGATCCTGGTGTTGCCAAGAGTCAGCTTCTTAAACACATAATCAACGTAGCACCCAGAGGGGTATACACCACTGGCAGAGGAAGTAGTGGAGTTGGTCTAACTGCTGCTGTTCAGAAAGATCCGGTGACAAATGAGATGGTTCTGGAAGGTGGAGCATTGGTGTTAGCAGATATGGGCATATGTGCCATTGATGAATTTGACAAGATGGATGAATCAGATCGTACAGCTATACATGAAGTTATGGAACAACAGACTGTTAGCATTGCCAAGGCTGGGATCACTACATCGCTGAATGCAAGGACTGCTGTCCTTGCTGCTGCTAATCCAGCatgGGGAAGATATGATCTAAGAAGAACTCCAGCTGAAAATATTAATCTTCCTCATGCCCTCCTATCAAGGTTTGATCTTCTATGGTTAATCCTTGATCGAGCTGATATGGATAATGATCTTGAAATGGCTAGGCATGTTGTATATGTTCACCAAAAGAAAGAGTCTCCCGCTCTAGGATTCACTCCTCTTGAACCATCTGTTCTACGTGCATACATATCAGCTGCAAGAAGATTGTCTCCTAGTGTCCCAAGGGAACTGGAAGAGTATATTGCTAGTGCATACGCTGGCATTCGTCAAGAAGAAGCAAGGTCCAATGCTCCACATTCCTACACAACTGTCAGAACATTGCTCAGTATTCTCCGCATATCAGCTGCACTAGCAAGACTCCGTTTTTCTGAAATTGTTGCTCAGAGTGATGTCGACGAAGCACTGAGGTTAATGCAGATGTCAAAATTCTCTTTGTACTCTGATGACCGTCAAAGATCTGGTCTGGATGCCATATCTGATATTTATTCCATACTGCGAGATGAAGCAGCTAGAGGTAACCGAATGGATGTCAGCTATGCCCATGCACTGAACTGGATATCTAGGAAGGGGTACAGCGAAGCCCAGTTAAAAGAGTGTTTGGAGGAGTATGCAGCACTAAATGTATGGCAGATACATCCTCACACCTTTGATATACGATTTATTGATGCTTGA 1419 0.4257 MTVHLRGELTRKVAPGDVVELSGIFLPIPYTGFRAMRAGLVADTYLEVMSVTHFKKKYEEYELRGDEEELIAQLAEDGDIYNKLARSLAPEIFGHDDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQKDPVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPHALLSRFDLLWLILDRADMDNDLEMARHVVYVHQKKESPALGFTPLEPSVLRAYISAARRLSPSVPRELEEYIASAYAGIRQEEARSNAPHSYTTVRTLLSILRISAALARLRFSEIVAQSDVDEALRLMQMSKFSLYSDDRQRSGLDAISDIYSILRDEAARGNRMDVSYAHALNWISRKGYSEAQLKECLEEYAALNVWQIHPHTFDIRFIDA 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0588 472 PRINTS Mini-chromosome maintenance (MCM) protein family signature 209 222 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ssu4g0588 472 PRINTS Mini-chromosome maintenance (MCM) protein family signature 233 245 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ssu4g0588 472 PRINTS Mini-chromosome maintenance (MCM) protein family signature 121 136 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ssu4g0588 472 PRINTS Mini-chromosome maintenance (MCM) protein family signature 181 195 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ssu4g0588 472 PRINTS Mini-chromosome maintenance (MCM) protein family signature 260 268 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ssu4g0588 472 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 398 IPR027417 -
Ssu4g0588 472 SUPERFAMILY Nucleic acid-binding proteins 1 48 IPR012340 -
Ssu4g0588 472 Gene3D - 65 397 IPR027417 -
Ssu4g0588 472 PANTHER DNA REPLICATION LICENSING FACTOR MCM7 1 450 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Ssu4g0588 472 Pfam MCM P-loop domain 68 290 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ssu4g0588 472 Pfam MCM AAA-lid domain 307 390 IPR041562 -
Ssu4g0588 472 SMART mcm 1 392 IPR031327 GO:0003677|GO:0005524|GO:0032508
Ssu4g0588 472 ProSiteProfiles MCM family domain profile. 80 286 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ssu4g0588 472 Gene3D - 1 58 IPR012340 -
Ssu4g0588 472 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 1 450 IPR031327 GO:0003677|GO:0005524|GO:0032508
Ssu4g0588 472 CDD MCM7 83 390 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Ssu4g0588 472 ProSitePatterns MCM family signature. 189 197 IPR018525 GO:0003677|GO:0005524|GO:0006260
Ssu4g0588 472 SMART AAA_5 122 275 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0588 Ssu-Chr4 9432159 9435444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0588 1 470 Core DNA Replication Machinery Family AT4G02060 88.936 0.0 868
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0588 K02210 - gmx:100811639 887.871