Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0587 ATGAACACCAAGGACGTCGATTTCAATGCAGACATAGCTCTGACGAAGGAGTTCCTTTCCAACTTCGCAGACGCCAATGGTGAAGCCAAATACATGAACATCCTGCAAGACGTTGCGAACCACAAAACTCGAGCAGTGCAGATCGACCTTGAGGACTTAATTAACTACAAAGATCTGGACGAGGAATTTCTGAGGCGTGTTACTGAGAATACTCGAAGGTATATTGGGATTTTTGCCAATGCAATTGATGAGCTCATGCCGGAGTCCACTGAGGCCTTCACGGATGATGATCATGACATATTGATGACTCAGAGATCTGACGAAGGAGCAGAAGGCACCGATGCTTATGATCCGCTTCAGAAGATGCCTCCTGAAATCAAGCGCTACTATGAGGTTTATATTAAAGCATCTTCAAAAGGACGGCCATTTACAATTAGGGAGGTGAAGGCTTCAAACATTGGTCAGCTTGTAAGAATCTCTGGTATTGTGACACGTTGCTCGGATGTTAAACCATTGATGAAAGTGGCTGTATACACATGCGAGGATTGTGGTTTTGAAATTTACCAGGAAGTAACAGCTCGAGTCTTCATGCCTTTGTTTGAGTGTCCATCAAAGCGCTGTGATACAAATAGGCGTAAGGGGAACGTTATCCTTCAACTGAGagcatcaaaattttga 678 0.4336 MNTKDVDFNADIALTKEFLSNFADANGEAKYMNILQDVANHKTRAVQIDLEDLINYKDLDEEFLRRVTENTRRYIGIFANAIDELMPESTEAFTDDDHDILMTQRSDEGAEGTDAYDPLQKMPPEIKRYYEVYIKASSKGRPFTIREVKASNIGQLVRISGIVTRCSDVKPLMKVAVYTCEDCGFEIYQEVTARVFMPLFECPSKRCDTNRRKGNVILQLRASKF 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0587 225 SUPERFAMILY Nucleic acid-binding proteins 15 225 IPR012340 -
Ssu4g0587 225 Pfam MCM OB domain 145 225 IPR033762 -
Ssu4g0587 225 PANTHER DNA REPLICATION LICENSING FACTOR MCM7 38 225 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Ssu4g0587 225 Gene3D - 12 103 - -
Ssu4g0587 225 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 122 134 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Ssu4g0587 225 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 160 171 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Ssu4g0587 225 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 195 207 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Ssu4g0587 225 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 178 189 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Ssu4g0587 225 Gene3D - 172 225 - -
Ssu4g0587 225 Pfam MCM N-terminal domain 16 135 IPR027925 -
Ssu4g0587 225 Gene3D - 145 171 IPR012340 -
Ssu4g0587 225 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 38 225 IPR031327 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0587 Ssu-Chr4 9430159 9431966 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0587 4 225 Core DNA Replication Machinery Family AT4G02060 73.874 1.85e-118 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0587 K02210 - gmx:100802903 411.764