Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0584 ATGGCTTTGATTCAACATTCGGTGAAATCTAAATATGAAGGAGGAAATCCACAAATGGACGAGATTCAACATTTcgtgaaatttgaaaatgaaggaAGAGATCCACAAATGGACAAGATTGAACGTTCAATGATATCTGAATATGAAGTAGGAGATCCACAAATGGACGagatgaagaggaagaagaaggcgTTGAACCATGAATATGCGAGGAAATCGCGAATGAAGAAGCAGAAGCGACTAGAGGATTTGACCAATGAAGTCAATAGATTGCAAAGTGTAAACAAGATGCTGGTAGAGAGCATTAAGGCGAAGAAGGAAATGTGTGTTGAGATTGAAGTTCCTAACAACATCTTGAGGGCTCAAATTGTGGAATTAGACGATCGATTGCGCTTTTTGAACTCTATCATTGAGGTTGCTGAAGAggttagtgttttaaaaacctgGCTTGAATTGATCGGTTGGACCAAGAACTGGTAG 480 0.3417 MALIQHSVKSKYEGGNPQMDEIQHFVKFENEGRDPQMDKIERSMISEYEVGDPQMDEMKRKKKALNHEYARKSRMKKQKRLEDLTNEVNRLQSVNKMLVESIKAKKEMCVEIEVPNNILRAQIVELDDRLRFLNSIIEVAEEVSVLKTWLELIGWTKNW 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0584 159 Gene3D - 57 113 - -
Ssu4g0584 159 SMART brlzneu 54 118 IPR004827 GO:0003700|GO:0006355
Ssu4g0584 159 Coils Coil 55 101 - -
Ssu4g0584 159 PANTHER BZIP TRANSCRIPTION FACTOR 44 37 147 - -
Ssu4g0584 159 PANTHER BZIP TRANSCRIPTION FACTOR 53 37 147 - -
Ssu4g0584 159 CDD bZIP_plant_GBF1 59 109 IPR045314 GO:0003700|GO:0006355
Ssu4g0584 159 SUPERFAMILY Leucine zipper domain 59 110 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0584 Ssu-Chr4 9363565 9364044 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0584 56 144 bZIP Transcription Factor Family AT3G62420 50.562 9.76e-22 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu4g0584 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0584 K25786 - gmx:778144 125.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0584 4 9363565 9364044 Ssu4g0584 4 9363565 9364044 ECH
Ssu7g1942 7 38779163 38779609 Ssu4g0584 4 9363565 9364044 ECH