Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0581 ATGGATTCGATTCAACCTTTGTCGAGTTCTAGATACAAAGGAGATCCACAaatggaggagaagaagatgaagaagatgtTTTCAAACCGTGAATCAGCAAGACGATCGCGGATGAGGAAGCAGAAGCAGTTAGAGGATTTGACTAATGAAGTCAACAGATTGCAAGGTGCGAACAAGAAGCTAGCAGAGTGCATAAAGGCCAAGGAGGAAGCATACATTGAGACTGAAGCTGCTAACAATATCCTGAGGACTCAAACTATGGAATTGGCTGATCGATTGTGCTTTTTGAACTCTATCATTGAGGTCGCTGAAGACGTCAATGGGTTATCAATTGAGATTCCAAAGATTAAGCCCTTGTAG 360 0.3917 MDSIQPLSSSRYKGDPQMEEKKMKKMFSNRESARRSRMRKQKQLEDLTNEVNRLQGANKKLAECIKAKEEAYIETEAANNILRTQTMELADRLCFLNSIIEVAEDVNGLSIEIPKIKPL 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0581 119 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 19 61 IPR004827 GO:0003700|GO:0006355
Ssu4g0581 119 SUPERFAMILY Leucine zipper domain 21 68 IPR046347 GO:0003700|GO:0006355
Ssu4g0581 119 CDD bZIP_plant_GBF1 22 72 IPR045314 GO:0003700|GO:0006355
Ssu4g0581 119 MobiDBLite consensus disorder prediction 1 42 - -
Ssu4g0581 119 PANTHER BZIP TRANSCRIPTION FACTOR 44 1 116 - -
Ssu4g0581 119 MobiDBLite consensus disorder prediction 14 42 - -
Ssu4g0581 119 PANTHER BZIP TRANSCRIPTION FACTOR 53 1 116 - -
Ssu4g0581 119 Pfam bZIP transcription factor 19 70 IPR004827 GO:0003700|GO:0006355
Ssu4g0581 119 Coils Coil 30 64 - -
Ssu4g0581 119 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 24 39 IPR004827 GO:0003700|GO:0006355
Ssu4g0581 119 Gene3D - 19 74 - -
Ssu4g0581 119 SMART brlzneu 17 81 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0581 Ssu-Chr4 9309955 9310314 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0581 1 116 bZIP Transcription Factor Family AT3G62420 49.167 2.62e-32 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu4g0581 bZIP_1 5.8e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0581 K25786 - ccaj:109814734 165.236
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0581 4 9309955 9310314 Ssu4g0581 4 9309955 9310314 ECH
Ssu4g0581 4 9309955 9310314 Ssu7g1942 7 38779163 38779609 PCT