Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0580 ATGGCTTCGATTCAACGTTCGTCGAGTTCCGGATCCGAAGGAGGAGACCAGCAAATCGACGAGAGGAAGCGGAAGAGGATGCTGTCGAACCGTGAATCCGCGCGGCGATCGCGGATGAGGAAGCAGAAGCAGTTGGAGGATCTGACCGATGAAGCTGGCAGATTGCAAGGCGCGAACAAGGAGCTTGCGGAGAGCATAAAGGCCAAGGAAGAAGCGTGCGTCGAGACCGAAGCCGCGAACAGCATTCTGAGGGCTCAGACCATGGAGTTGGCCGATCGATTGCGCTTCTTGAACTCCATCCTTGAGATCGCTGAAGAGGTCGGAGGGTTGTCCGTCGAGATTCCCGAGATTCCAGATCCTCTGCTTCGGCCGTGGCAGATTCCTCACCCGACGCAACCTATTATGGCCACCGCGAACATGTTTCTGCTTTGA 432 0.5625 MASIQRSSSSGSEGGDQQIDERKRKRMLSNRESARRSRMRKQKQLEDLTDEAGRLQGANKELAESIKAKEEACVETEAANSILRAQTMELADRLRFLNSILEIAEEVGGLSVEIPEIPDPLLRPWQIPHPTQPIMATANMFLL 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0580 143 SMART brlzneu 18 82 IPR004827 GO:0003700|GO:0006355
Ssu4g0580 143 MobiDBLite consensus disorder prediction 1 15 - -
Ssu4g0580 143 MobiDBLite consensus disorder prediction 16 54 - -
Ssu4g0580 143 SUPERFAMILY Leucine zipper domain 22 70 IPR046347 GO:0003700|GO:0006355
Ssu4g0580 143 PANTHER BZIP TRANSCRIPTION FACTOR 53 1 141 - -
Ssu4g0580 143 Pfam bZIP transcription factor 22 73 IPR004827 GO:0003700|GO:0006355
Ssu4g0580 143 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 25 40 IPR004827 GO:0003700|GO:0006355
Ssu4g0580 143 Gene3D - 20 77 - -
Ssu4g0580 143 PANTHER BZIP TRANSCRIPTION FACTOR 44 1 141 - -
Ssu4g0580 143 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 20 67 IPR004827 GO:0003700|GO:0006355
Ssu4g0580 143 MobiDBLite consensus disorder prediction 1 54 - -
Ssu4g0580 143 CDD bZIP_plant_GBF1 23 73 IPR045314 GO:0003700|GO:0006355
Ssu4g0580 143 Coils Coil 31 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0580 Ssu-Chr4 9299499 9299930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0580 1 141 bZIP Transcription Factor Family AT3G62420 51.389 1.53e-46 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu4g0580 bZIP_1 8.5e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0580 K25786 - gmx:778144 237.654