Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0575 ATGGCCTCCAAAACTGCTAACTCTGCCTCCAAACATCAAAAACAACATGGAGAGGGAGCAAAAGATGCTGCTAGAAGAACCTTGAAGACCAAGATAAAACAGTTGACAGATCAAATCCATGCTGAGCGAGGGGAATCGGTTAAAGAAAAAGTTCAGAATCATTGGAAGAATCTTGAGGGTCTGTTTTCAACGGTCAAGTCAGTAATATCAGACAGGGCCTCTTTGCAGACTGAGGAAAATGTCAATATGCTTTCTTCAAGAATTGAAAACCCTTTTAGTAAGATCGATGGTTTCCCTGAAGGTATGGTAGAGAAGGATCGGATCAACAATGTGGACTTATCATTTGCAAAAAGCATTAGGATTCCATACATGGAAAAATTACCACCATATACATCTTGGGTATATGTGGCCAGAAATGAGAGAATGGCCAAAGATCAGTCGGTTATTGGAAAATACCAAATGTACTATGATAAAAATGGAGGTGAAATGAAGATATGCAGTGACAGTGAGGAAGAGATAGTAAATCCCGAGAATGTTAAACATGACTTCACTGAGGCTGAAGACCGAATTCTACGGATCACACTTGACGAATATGGGTCTACTGAGGAGGTATTGAGTATCGTTAAAGAGTCTGTCAAGACTACCGATTCACAAATTCAGGAGAGGTATGAAAAACTCAAGGAAAAGAACATGGGGAGTTTAGACCAGCATTCTAAAAATTGTGATTGTCGAGGATGTGAATCTCATCTTGGAATATGTTTAGAGAAAGGCTTAAGTGATACTTTAAAAACTTTTGATACCCTTTTTTGTCGTCAGTGCCTGATCTTTGGTTGTCCTGTGCATGGCACTTCTCAACCTTTAATATACCCTAGTGAAAAGCCGCCAGTTTGGAAACCTGAAGGTGACAGGAAACCATGCAGTGATCAGTGTTACCTTCTgTTAAAGGACGTCAGCATGTTGTCAGAAAATTCAGCTCGAGGGTCTTTTCagtataaaagaattaaatcaatGGAAGGGGACTCAACATTGCCTCCTGATGAGTCTCAGAATTCTAGTAATGAGCTGAAGAGAATCTCAGATGATATAGTTACCGAAGTTGACAACCATAACAGGGAACTAAGTTTGGATGCTAGTGATGAAGAAAACCGCACAATGTATCGTGAATCTTCGAAAGGTCTGGCTGAACATACTTCAAAGAAATTAACGGTTTCTGGTAGCTCTGGCTGTGGTGCGCGGGACAAGGGAGTTGGGGATAGACAAAAAGATCTCCCAAATGAGATAGAATTTAGCCAGTTTTCCAATTCAACGGAAGTTCAAGCATATGAGATGACAAGTAACTCAGTTTGGAAACCTCTGGAGAGAGATTTATATTTGAAGGGAGTAGAAATGTTTGGAAAAAATAGTTGCCTTATAGCCAGGAACTTACTTCCTGACTTGAAGACTTGCACGGAAGTAGCTAGGTACATGATTGCTGGTGGAGAGTCAATGCCCCaaggatccataccaagttCAATCATGGACAGAAATGAAAAGATTAATGGAGAGTGCACAAACCAAGAAATGCCATCAAGATCGCGGTCGCACCGGAAAAAGGGCAAACCTAGGAAGTTCAATGATTCTCGGAAGTCTGCTGGCCTCCCACCTTGTTGGAGGAAAATTGCTTATGGGAAAAACCTCTGTAATAAGCAGTATACTCCCTGTGGGTGTCACGGAATGTGTGGAAAGGAATGTCCTTGTCTTGTTAATGAAACTTGCTGTGAAAAATATTGTGGGTGTTCAAAGCTTTGCAATAACCGGTTCAGAGGATGTTATTGTATTAAGAGTCAATGTAGAAGTCGACTATGTCCATGCTTTGCAGCCAACCGTGAATGTGACCCAGATGTCTGTCGAAATTGCTGGGTTAGTTGCGGCGATGGTTCATTAGGGGAGCCCCCTCGACGTGGAGATGGTCAATGTGGAAATATGAATCTTCTTTTAGGGCAAAAAGAGAGGATTCTTTTGGCAAAGTCAGATGTTACAGGATGGGGAGCCTTCGCAAAGAACCCagttaagaaaaatgtttgccTAGGAGAGTACACAGGTGAACTAATTACTCATAAAGAAGCAGAAAAGTGTGGAAAACTATATGATTGTATAAACACTTCATTCCTTTTTAACCTCAATGATCAGGCAAGTTGGGTTATTGATGCTTATCAACTGGGAGACAAGTTAAAATTTGTGAACCACTCATCAAAACCCAACTGCTACACAAAGGTGATGCTTGTTGGAGGGGATCATCAAGTCGACATATTTGCCAAGGAAAACATTAAAGCTGGTGTTGAGCTTTTCTATGACTATTACTATGATCTAGATTGCGCACCGCAATGGGCTTTTCCACCTAAAGTCGAGGCTTCCAAGAAAGATGAATTAGTTGTTTCTCAAGGCAAGgATACTGATGTTGGTCCTGGAAGTAAACAAAACACTAGAGCTAACTTTGCCAACATGTCCAATATTGTTTTTGCACAAgATACTGATGTTGGTGCTGGAAGAGAACAAAATACTAGAGTTAACTTAGCCAAGAACAAGTCCAATATTGTTGTTGCGCAGgATATTGATGTTGGTCTTGGAAGTGATCCAAATACTGGAGCTAAGTTAGCCAACAACATGTTCAATATTGTTGTTGTGCAGGATACTGATGTTGGTGCTATAAGTGAACAAAATATTGGAGCTAACTTAGCTAACAACATGTCTAATATTGTTGTTGCACAGgATATTGATGTTGGTGCTGGAAGTGAACAAAATACTGGAGCTTACTTAGTCATCAACATGTCCAATATTATTGTTGCGCAGgATGCTGATGTTGGTCCTAGAAGTGAACAAAGTACTGGAGCTAACTTAGCCAACAACATGTCCAAGGACTAg 2901 0.3985 MASKTANSASKHQKQHGEGAKDAARRTLKTKIKQLTDQIHAERGESVKEKVQNHWKNLEGLFSTVKSVISDRASLQTEENVNMLSSRIENPFSKIDGFPEGMVEKDRINNVDLSFAKSIRIPYMEKLPPYTSWVYVARNERMAKDQSVIGKYQMYYDKNGGEMKICSDSEEEIVNPENVKHDFTEAEDRILRITLDEYGSTEEVLSIVKESVKTTDSQIQERYEKLKEKNMGSLDQHSKNCDCRGCESHLGICLEKGLSDTLKTFDTLFCRQCLIFGCPVHGTSQPLIYPSEKPPVWKPEGDRKPCSDQCYLLLKDVSMLSENSARGSFQYKRIKSMEGDSTLPPDESQNSSNELKRISDDIVTEVDNHNRELSLDASDEENRTMYRESSKGLAEHTSKKLTVSGSSGCGARDKGVGDRQKDLPNEIEFSQFSNSTEVQAYEMTSNSVWKPLERDLYLKGVEMFGKNSCLIARNLLPDLKTCTEVARYMIAGGESMPQGSIPSSIMDRNEKINGECTNQEMPSRSRSHRKKGKPRKFNDSRKSAGLPPCWRKIAYGKNLCNKQYTPCGCHGMCGKECPCLVNETCCEKYCGCSKLCNNRFRGCYCIKSQCRSRLCPCFAANRECDPDVCRNCWVSCGDGSLGEPPRRGDGQCGNMNLLLGQKERILLAKSDVTGWGAFAKNPVKKNVCLGEYTGELITHKEAEKCGKLYDCINTSFLFNLNDQASWVIDAYQLGDKLKFVNHSSKPNCYTKVMLVGGDHQVDIFAKENIKAGVELFYDYYYDLDCAPQWAFPPKVEASKKDELVVSQGKDTDVGPGSKQNTRANFANMSNIVFAQDTDVGAGREQNTRVNLAKNKSNIVVAQDIDVGLGSDPNTGAKLANNMFNIVVVQDTDVGAISEQNIGANLANNMSNIVVAQDIDVGAGSEQNTGAYLVINMSNIIVAQDADVGPRSEQSTGANLANNMSKD 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0575 966 Coils Coil 25 45 - -
Ssu4g0575 966 ProSiteProfiles SET domain profile. 663 780 IPR001214 GO:0005515
Ssu4g0575 966 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 830 IPR025778 GO:0031519
Ssu4g0575 966 CDD SET_EZH 663 781 - -
Ssu4g0575 966 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 22 809 IPR045318 GO:0006338|GO:0018024
Ssu4g0575 966 Gene3D SET domain 564 781 IPR046341 -
Ssu4g0575 966 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 22 809 - -
Ssu4g0575 966 SUPERFAMILY SET domain 560 783 IPR046341 -
Ssu4g0575 966 SMART set_7 663 786 IPR001214 GO:0005515
Ssu4g0575 966 MobiDBLite consensus disorder prediction 1 24 - -
Ssu4g0575 966 SMART CXC_2 598 635 IPR033467 -
Ssu4g0575 966 MobiDBLite consensus disorder prediction 515 543 - -
Ssu4g0575 966 ProSiteProfiles CXC domain profile. 550 649 IPR026489 -
Ssu4g0575 966 Pfam CXC domain 602 633 IPR041355 -
Ssu4g0575 966 Pfam SET domain 674 779 IPR001214 GO:0005515
Ssu4g0575 966 MobiDBLite consensus disorder prediction 336 421 - -
Ssu4g0575 966 MobiDBLite consensus disorder prediction 358 395 - -
Ssu4g0575 966 MobiDBLite consensus disorder prediction 342 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0575 Ssu-Chr4 9168086 9216660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0575 652 779 C2H2 Transcription Factor Family AT2G23740 26.573 1.05e-07 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Ssu4g0575 SET 1.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0575 - - gmx:106798111 1188.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0575 4 9168086 9216660 Ssu4g0575 4 9168086 9216660 ECH
Ssu4g0575 4 9168086 9216660 Ssu7g1938 7 38741458 38750661 PCT