Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0574 ATGGGTTATGGCTCTATACAAGAGGATGTGCTTCAAGGGAAAGACAGTTTCTCTGGAATGGAATTGCTGGGAGAGATTGATCCTCTCCCTAGTGAGAATGGAAAAGGAGCCAAATTGTTCAAAGATCAAAATCAGAAACAGCAACAAGAACTCAGGGTTGATAACTTGATATTCGAAGAGGTCAACTTTGACCCCGATATGCAAATGCATCCAACACAACTATTTCAGGAAACTACAGCAACAGGGCTAATAAAACATGGTGTGGCAAGTTCAAAACCAGTTGAATACAATAAGCAGGTGCATCCATCATTGGCATCCTTAGAGCTCCTGAGAAATTACGGAAGCAGGTTCAAGAGGCTAAGCGAGCAAAATATAAGCACCTTAAGCAATATTGAAACTTCTTTGGATCACCAGAAGATGTCAACTGAAGAAATAATAAGAGTGGCTGGAGCAAGGTATGTCCAATACTCTGCACATTGGAATGATAGTTTTTGCATCCCTTTGCACCCCTACGGATTGGATCATGGGGGTTTGTCTGAGGAAGAAAATAGAGATGTAGAACTTGCGCAGTTTCTCCTTGCTGCAGCTGAGAAGGTAGGTTGCCAACAATTTGAACGTGCAAACAGGTTGCTATTCCATTGTGAATGGAATTCATCTGCCAGTGCAAGCCCTGTTCAAAGAGTTATCTTTCATTTCGCTCGAGCACTTCGAGAGAGAATAGACAAAGAGACAGGAAGGATGGCAGTTAAGGGatcagagaaaaataaagaaagggaGTTAATTCAGAGGATGGACACTAATGTTGTCCTCACATGCCATCAAAAAATTCCTTTCAATCAAGTAATGCAATTCACTGGGATACAAGCTATAGTGGAACATGTTGCATCTGAGACCAAAATCCATCTTATAGATCTTGAAATAAAGACTGGGGTGCATTGCATAGCTTTGATGCAACCACTGACAGAACGCCAGGATTGCATAGTGCAACTTTTGAAGATAACTGCCATTGGACTCAATTCATGCAAAACCATGATAGAAGAGACTGGCAAAAGGTTAGCTAGTTTTGCTGAATCCTTGAACTTACCCTTTTCATATAAGGCAGTTTTTGTGGCAGACATTGCAGAAATAAAGGAAGGTCATTTCGAAATTGGAGAGGATGAAGCTGTGGCTGTCTACTCTCCATATTTTCTAAGGTGCATGGTATCAAGGTCTGATTGTATGCAAAACTTGATGCGGGTTATAAGAAATATCAAACCAGTTATAATGATTGTCCTTGAAGTAGAAGCAAACCATAATTCACCCTCCTTTGTGAATCGCTTCACTGAAGCATTGTTCTACTACTCAGCATTTTTTGATTGCCTTGAAACCTGCATAAAGCATGAGATTGAGTGCAGAATGACAATCGAAGCAGTATTATCTGAAGGGATACGAAACATTGTTGCTATGGAAGGCAGGGAAAGGACAGTTAGAAATGTGAACATAGATGTTTGGAGAAGGTTCTTTGCAAGATACCGAATGGTGGAAACCGTATTTAGTGAGTCATCACTTTACCAAGCTGACTTAGTCGCCAAAGAGTTTGTTTTTGGGAAATTCTGCACTATGGAAAAGAATGGTGAGTGTCTTATAGTGGGATGGAAAGGGACCCCAATGCATTCAATCTCAGCTTGGAGGTTTCTTTGA 1680 0.4036 MGYGSIQEDVLQGKDSFSGMELLGEIDPLPSENGKGAKLFKDQNQKQQQELRVDNLIFEEVNFDPDMQMHPTQLFQETTATGLIKHGVASSKPVEYNKQVHPSLASLELLRNYGSRFKRLSEQNISTLSNIETSLDHQKMSTEEIIRVAGARYVQYSAHWNDSFCIPLHPYGLDHGGLSEEENRDVELAQFLLAAAEKVGCQQFERANRLLFHCEWNSSASASPVQRVIFHFARALRERIDKETGRMAVKGSEKNKERELIQRMDTNVVLTCHQKIPFNQVMQFTGIQAIVEHVASETKIHLIDLEIKTGVHCIALMQPLTERQDCIVQLLKITAIGLNSCKTMIEETGKRLASFAESLNLPFSYKAVFVADIAEIKEGHFEIGEDEAVAVYSPYFLRCMVSRSDCMQNLMRVIRNIKPVIMIVLEVEANHNSPSFVNRFTEALFYYSAFFDCLETCIKHEIECRMTIEAVLSEGIRNIVAMEGRERTVRNVNIDVWRRFFARYRMVETVFSESSLYQADLVAKEFVFGKFCTMEKNGECLIVGWKGTPMHSISAWRFL 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0574 559 Pfam GRAS domain family 189 557 IPR005202 -
Ssu4g0574 559 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 41 557 - -
Ssu4g0574 559 ProSiteProfiles GRAS family profile. 179 557 IPR005202 -
Ssu4g0574 559 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 41 557 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0574 Ssu-Chr4 9158183 9160474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0574 186 558 GRAS Transcription Factor Family AT1G66350 29.679 5.93e-47 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu4g0574 GRAS 1e-78 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0574 - - gmx:100791952 929.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0574 4 9158183 9160474 Ssu4g0574 4 9158183 9160474 ECH