Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0572 ATGGACAGTAATACTAATGCCTCCCCCCAACTTGAGTCAGAAGCATCTTCAGAGCTCAAATCAGAAACTCAAACATCAAAGAAACGGAAAATGGTTGAGAAAACAGTTGTGGCAGTGAGGATTGGAGAGAATGTTAGCAAGCTGAAGAATGAAGGGCTACCTTCGGATTTTTGGTCTTGGAGGAAATATGGACAAAAGCCAATCAAAGGGTCTCCGTATCCAAGGGGCTATTACAAGTGCAGCACATCCAAAGGTTGTTCAGCCAAAAAGCAAGTAGAGAGATGCAGAACAGATGCTTCAATGCTCATCATCACATATACGTCTACACATAACCATCCATGTCCCGCTACCATCTCCACCACAAATTCACCCCAACAACCAAAAGAATCCGAATCCGAAACCCCCCAAGACCTCTCAGCTACCTCGAAGGAGGAAGACCAAGAACATATAGAAGAGCAAAGGGATAATAAGACCAGTGATGAAGGtacaaatgaagaaaattttcattacttGCAATCTCCAATACGTTGCTCCCATGACATCATCATAGACCAAGAAGATCCTTTCAAACTAAACACGGAGAAAAGCCATGACAGAATAGATCTCCTTCTAGAGGAAGAGCCCCTTTGCTATGCACAGCTCAAGAACTTGTCTGCTGCCAAAAATGAAGAACTTGACTTTTTCGATGAGCTTGAGGAGTTACCCATGTCTTCGTCTTTCTTGCACTTTAGGAGAAGCATTTTTTCCGATGAAAGGATTCCCGTTGCCCCTTCTTGA 777 0.4247 MDSNTNASPQLESEASSELKSETQTSKKRKMVEKTVVAVRIGENVSKLKNEGLPSDFWSWRKYGQKPIKGSPYPRGYYKCSTSKGCSAKKQVERCRTDASMLIITYTSTHNHPCPATISTTNSPQQPKESESETPQDLSATSKEEDQEHIEEQRDNKTSDEGTNEENFHYLQSPIRCSHDIIIDQEDPFKLNTEKSHDRIDLLLEEEPLCYAQLKNLSAAKNEELDFFDELEELPMSSSFLHFRRSIFSDERIPVAPS 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0572 258 Gene3D WRKY domain 40 116 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu4g0572 258 MobiDBLite consensus disorder prediction 1 20 - -
Ssu4g0572 258 MobiDBLite consensus disorder prediction 1 31 - -
Ssu4g0572 258 PANTHER WRKY TRANSCRIPTION FACTOR 69-RELATED 14 243 - -
Ssu4g0572 258 MobiDBLite consensus disorder prediction 138 164 - -
Ssu4g0572 258 Pfam WRKY DNA -binding domain 56 113 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu4g0572 258 MobiDBLite consensus disorder prediction 111 137 - -
Ssu4g0572 258 MobiDBLite consensus disorder prediction 111 164 - -
Ssu4g0572 258 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 14 243 IPR044810 GO:0003700
Ssu4g0572 258 SUPERFAMILY WRKY DNA-binding domain 51 115 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu4g0572 258 ProSiteProfiles WRKY domain profile. 49 115 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu4g0572 258 SMART WRKY_cls 54 114 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0572 Ssu-Chr4 9133653 9134939 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0572 1 115 WRKY Transcription Factor Family AT2G34830 56.034 3.11e-36 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu4g0572 WRKY 4.2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0572 - - gmx:100127368 442.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0572 4 9133653 9134939 Ssu4g0572 4 9133653 9134939 ECH