Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0568 ATGTCAATCGGTATATTGAAAAAGGTTGAAGGCTTGATGCTGAAATGGACGCTTATATTATCTTGCCTGGTATTTATGATAGAGGCTGGTGTAAATGATAAAACAACGGATCCCCCTTCTTTATATGATTCTAGTTCACCTTTGGCCTTCGTTGTCGTTCATGATCTACCTGTACCAGCAAATCTCCATGTGTCAAAGCATGTGCTTTCTCATGGTGCACCAATTGCAGCACTGTCACCAGTTAATCCTCCTTCATATGGTCCTTTCACAAGTAATGTTCAATCCCCTACAAGTTCACATTTATCCATACCATTCAAGAAGAAGAGTGAAATGAAACCTCCAATTTCTGGCTTTAAAGATATTGCTCCTGCACATTCTACTGCAGCTGCAGGCCCTTCCTCTTTGGCTCAGCCATCATTGTCTCCTTATGCTTCTAATTGTTGTAAACAAGACATGGTGCTGAAAAGAGGCAGTAAGAATTGCCACTGTGCATATCCCATAAAGCTAgacctttttcttttgaatgtCTCTCAAAATCCTAATTGGAATCTTTTTCTTGATGAATTAGCTACCCAGCTTGGGTTGCAAAATACCCAGATTGAACTGATAAACTTCTATGTACTCAGCTtatcaacattaaatatatcaatGAATATTACTCCACATAAAGGCATCAGTTTCTCTGCCAATGAAGTTTCTAAAATAAACTCTTCGCTTTCAATGCATAAGGTTCAACTAGACCCTGGATTAGTGGGTGGATACAAACTTCTCAATATAACATGGTTTGAACCTCCACCTCCTTCTCAATCTCCTACTTTAGCTGCATCACCTGTGAAAACACCTTTGTATCATTCACCTACTGCTATATCATCGAGTTCTCCAAAAAGAGGAAGGCATTCAAATTTGTTTCTTATTCTTGGAATTGCTATTGGCATAGTCTTCATTGCTATCGTATCTGTACTTATATTCTGTTTGTGTACGTTCCTGGCAAAAGCAAACACAGCTCCCATAGAAACCGAAAAGCCAAGGACAGAGAGTGCAGCAGCTTCAGCTGTCGGTTCTCTTCCCCACCCAACTAGTACACGATTTATTGCTTATGAAGAGCTTAAAGAAGCAACAAACAATTTTGAACCAGCAAGTGTACTTGGAGAAGGAGGGTTTGGCAGAGTTTTTAAAGGTGTCTTAAATGATGGTACTCCTGTAGCAATTAAGAGGCTTACAAGTGGAGGGCAACAGGGCGACAAAGAGTTTGTGGTTGAGGTTGAGATGCTTAGCCGGTTGCATCATCGTAACCTTGTAAAACTAGTGGGATACTATAGTAATCGTGACTCATCACAAAATTTACTTTGCTATGAGCTTGTCTCTAATGGAAGTTTGGAGGCTTGGCTTCATGGTCCCTTGGGAATCAATTGTCCTTTGGATTGGGACACCAGAATGAAGATTGCGCTTGATGCTGCAAGGGGACTTTCATACCTGCATGAAGACTCACAGCCCTGTGTAATACATAGAGACTTCAAGGCATCCAACATATTGCTTGAGAACAACTTTCATGCTAAGGTTGCAGATTTTGGTCTTGCTAAGCAAGCACCTGAAGGCAGATCTAATTATTTGTCTACTCGTGTCATGGGGACATTTGGGTACGTAGCTCCTGAATATGCCATGACTGGACACCTACTTGTTAAAAGTGATGTTTATAGCTATGGTGTTGTCTTGCTGGAGCTGCTTACTGGTAGGAAGCCTGTGGATATGTCACAGCCAACTGGACAAGAGAACCTTGTTACTTGGGCTAGGCCAATCCTTAGAGATAAGGACCGGTTGGAAGAGATTGCTGATCCAAGACTTGGGGGAAAGTATCCAAAGGAAGATTTTGTACGTGTTTGCACTATTGCTGCAGCCTGTGTTGCTCCCGAAGCAAGCCAACGACCCACAATGGGTGAAGTGGTACAGTCACTTAAAATGGTGCAGCGCATCACAGAATACCATGATTCTGCGTTACCCTCATCCAAAACTCGACGCAACCTGAGACAGTCCTCAAGCACTTTTGAATTTGACGGAACATCTTCAATGTTCTCTTCGGGTCCTTACTCTGGTCTAAGTGCCTTTGACAATGACAACATTTCTAGAACTGCGGTTTCCTCTGAAGATCTTTGTGAAGGACGATGA 2163 0.4152 MSIGILKKVEGLMLKWTLILSCLVFMIEAGVNDKTTDPPSLYDSSSPLAFVVVHDLPVPANLHVSKHVLSHGAPIAALSPVNPPSYGPFTSNVQSPTSSHLSIPFKKKSEMKPPISGFKDIAPAHSTAAAGPSSLAQPSLSPYASNCCKQDMVLKRGSKNCHCAYPIKLDLFLLNVSQNPNWNLFLDELATQLGLQNTQIELINFYVLSLSTLNISMNITPHKGISFSANEVSKINSSLSMHKVQLDPGLVGGYKLLNITWFEPPPPSQSPTLAASPVKTPLYHSPTAISSSSPKRGRHSNLFLILGIAIGIVFIAIVSVLIFCLCTFLAKANTAPIETEKPRTESAAASAVGSLPHPTSTRFIAYEELKEATNNFEPASVLGEGGFGRVFKGVLNDGTPVAIKRLTSGGQQGDKEFVVEVEMLSRLHHRNLVKLVGYYSNRDSSQNLLCYELVSNGSLEAWLHGPLGINCPLDWDTRMKIALDAARGLSYLHEDSQPCVIHRDFKASNILLENNFHAKVADFGLAKQAPEGRSNYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPTGQENLVTWARPILRDKDRLEEIADPRLGGKYPKEDFVRVCTIAAACVAPEASQRPTMGEVVQSLKMVQRITEYHDSALPSSKTRRNLRQSSSTFEFDGTSSMFSSGPYSGLSAFDNDNISRTAVSSEDLCEGR 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0568 720 MobiDBLite consensus disorder prediction 664 685 - -
Ssu4g0568 720 CDD STKc_IRAK 382 652 - -
Ssu4g0568 720 Gene3D Transferase(Phosphotransferase) domain 1 454 673 - -
Ssu4g0568 720 SUPERFAMILY Protein kinase-like (PK-like) 354 653 IPR011009 -
Ssu4g0568 720 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ALE2 8 720 - -
Ssu4g0568 720 ProSiteProfiles Protein kinase domain profile. 376 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0568 720 Pfam Protein kinase domain 379 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0568 720 ProSitePatterns Serine/Threonine protein kinases active-site signature. 500 512 IPR008271 GO:0004672|GO:0006468
Ssu4g0568 720 ProSitePatterns Protein kinases ATP-binding region signature. 382 404 IPR017441 GO:0005524
Ssu4g0568 720 Gene3D Phosphorylase Kinase; domain 1 338 453 - -
Ssu4g0568 720 PANTHER OS01G0750732 PROTEIN 8 720 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0568 Ssu-Chr4 9086361 9092372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0568 12 720 Receptor kinase-like Gene Family AT4G02010 67.273 0.0 956
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Ssu4g0568 Pkinase 2.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0568 - - gmx:100793528 1295.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0568 4 9086361 9092372 Ssu4g0568 4 9086361 9092372 ECH
Ssu4g0568 4 9086361 9092372 Ssu7g1932 7 38664195 38668830 PCT