Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0567 ATGTCGAAGAGGAAGTTCGGATTCGAAGGGTTTGGCATAAACCGCCAATCCACTTACAGCTTCGAGCGATCTCAGGCCCCTCAGCGACTCTACGTGCCTCCCTCGGCGCGCCACGGCCACGACAACTACGAGGACACCGACCTCGACAACATCGAGTACGACGACGACGAGGGGAACAAGAACAATGGCGGCAACAACAACGGCGACGAAATCGACCCCCTCGACGCGTTCATGGAGGGGATTCACGAGGAGATGAGGGCGGCGCCACCGCCGAAACCGAAGGAGAAGGCGGAGGACAGGTACAAGGACGACGAAGATGACGATCCGATGGAGAGCTTTTTGAAGGCGAAGAAGGACCTAGGGTTGACTCTGGCGTCGGAGGCGCTGCACGCTGGGTATGATTCCGATGAGGAGGTTTATGCTGCTGCGAAAGCCGTGGACGCTGGCATGCTTGAGTATGATTCTGACGATAACCCTATTGTTATCGACAAGAAGAAAATTGAGCCTATTCCTGCTCTCGATCACTCGTCCATTGATTACGAGCCTTTCAATAAGGATTTTTATGACGAGACACCTTCAATATCAGGTATGAGTGAGCAGGATGTAAGTGAATACCGGAAGAGTTTGGCTATTCGTGTATCAGGTTTTGATGTTCCTAAGCCAATAAAGGCATTTGAGGACTGTGGGTTTCCTTCACAGATTATGAATGCTATAAAAAAACAAGGGTATGAGAAGCCCACGTCTATCCAATGTCAAGCTTTGCCAGTTGTGCTATCTGGCAGGGATATCATTGGTATAGCAAAAACTGGTTCTGGTAAAACTGCTGCTTTTGTGCTTCCTATGATTGTGCATATCATGGATCAGCCTGAGCTTCAGAAGGAGGAGGGGCCTATAGGGGTGATATGTGCACCTACCAGAGAGTTGGCACATCAGATATATCTGGAGTCCAAGAAATTTGCAAAAGCATATGGGATACGTGTCTCTGCTGTCTATGGTGGAATGTCAAAACTTGAACAGTTCAAAGAACTCAAGGCAGGATGTGAGATAGTTGTTGCTACCCCTGGCAGATTGATAGACATGCTGAAAATGAAGGCATTGACAATGACGAGAGCAACTTACCTGGTGCTTGATGAGGCTGATCGGATGTTTGATCTTGGGTTTGAGCCGCAGGTAAGGTCCATTGTTGGTCAGATTAGGCCAGACCGCCAAACTTTACTGTTTTCTGCAACAATGCCGCGTAAAGTTGAAAAGTTGGCCAGGGAAATCCTTACCGATCCTATTAGAGTTACTGTTGGAGAGGTGGGGATGGCAAATGAAGATATTACTCAAGTTGTTCATGTAATTCCTTCTGATGCTGAGAAAATGCCTTGGCTTCTGGAAAAGCTTCCTGAAATGATTGATCAAGGTGATACCCTAGTTTTTGCTTCCAAAAAGGCTACTGTGGATGAAATTGAATCACAGTTGGCTCAGAGCGGCTTTAAAGTTGCGGCCCTGCATGGTGATAAAGATCAAGCTTCTCGTATGGATATTTTACAGAAGTTTAAATCTGGCCTCTACCATGTGCTCATTGCAACTGATGTTGCTGCCCGTGGTCTTGACATCAAGTCAATTAAGTCTGTGGTAAACTTTGATATTGCAAAAGATATGGACATGCATGTCCATCGCATTGGAAGAACAGGCCGTGCTGGTGACAAGGATGGAGTTGCATACACTCTTATAACTCAGAAAGAAGCACGGTTTGCTGGTGAATTGGTTAATAGCTTAGTTGCTGCTGGTCAGAATGTATCCGTGGAGTTGATGGATCTTGCTATGAAGGATGGGAGATTCAGGTCGAAACGTGATGCAAGAAAAGGAGGTGGGAAAAAGGGCAGAGGTAGAGGTGGTGGTGGGGGTGGCCGAGGTGTGCGTGGAGTGGATTTTGGCTTGGGCATTGGATATAATCCTGAGTCAAACAGCGCCCCATCTAACACAGTTCCCAGTCGATCTGCCATGGTAAATTCTCTGCGAACAGGAATGATGTCACAATTTAGGAGTAACTTTGTTGCTGCTTCATCAAACTCTCAGAATCAAGGATTCGGTAACAATACAAGCATGGCTGCTAATAAGAGACCAGCACTCCCTGGTTTTGTATCCGGTGGATCAATTGGTGGTGACATAAGTACTTACCAGCATACTGCTTCACCCAATCCTGCTACATCAGTGGTAAATTCCACCAGTCAAAGTTCTGGAGTAAATCCTGGTCAGAAGAGCACGAACAGTTCTAAACCTAGGGAAAGGCGGAGGCCATCAGGTTGGGATAGGTAG 2304 0.4709 MSKRKFGFEGFGINRQSTYSFERSQAPQRLYVPPSARHGHDNYEDTDLDNIEYDDDEGNKNNGGNNNGDEIDPLDAFMEGIHEEMRAAPPPKPKEKAEDRYKDDEDDDPMESFLKAKKDLGLTLASEALHAGYDSDEEVYAAAKAVDAGMLEYDSDDNPIVIDKKKIEPIPALDHSSIDYEPFNKDFYDETPSISGMSEQDVSEYRKSLAIRVSGFDVPKPIKAFEDCGFPSQIMNAIKKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLESKKFAKAYGIRVSAVYGGMSKLEQFKELKAGCEIVVATPGRLIDMLKMKALTMTRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPRKVEKLAREILTDPIRVTVGEVGMANEDITQVVHVIPSDAEKMPWLLEKLPEMIDQGDTLVFASKKATVDEIESQLAQSGFKVAALHGDKDQASRMDILQKFKSGLYHVLIATDVAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLVAAGQNVSVELMDLAMKDGRFRSKRDARKGGGKKGRGRGGGGGGRGVRGVDFGLGIGYNPESNSAPSNTVPSRSAMVNSLRTGMMSQFRSNFVAASSNSQNQGFGNNTSMAANKRPALPGFVSGGSIGGDISTYQHTASPNPATSVVNSTSQSSGVNPGQKSTNSSKPRERRRPSGWDR 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0567 767 MobiDBLite consensus disorder prediction 716 752 - -
Ssu4g0567 767 Pfam Helicase conserved C-terminal domain 459 563 IPR001650 -
Ssu4g0567 767 MobiDBLite consensus disorder prediction 610 635 - -
Ssu4g0567 767 MobiDBLite consensus disorder prediction 753 767 - -
Ssu4g0567 767 MobiDBLite consensus disorder prediction 75 110 - -
Ssu4g0567 767 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 375 383 IPR000629 -
Ssu4g0567 767 SMART ultradead3 242 444 IPR014001 -
Ssu4g0567 767 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 454 603 IPR001650 -
Ssu4g0567 767 Gene3D - 186 431 IPR027417 -
Ssu4g0567 767 CDD SF2_C_DEAD 441 573 - -
Ssu4g0567 767 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 24 45 651 - -
Ssu4g0567 767 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 370 598 IPR027417 -
Ssu4g0567 767 SMART helicmild6 482 563 IPR001650 -
Ssu4g0567 767 Pfam DEAD/DEAH box helicase 247 418 IPR011545 GO:0003676|GO:0005524
Ssu4g0567 767 MobiDBLite consensus disorder prediction 1 110 - -
Ssu4g0567 767 Gene3D - 432 607 IPR027417 -
Ssu4g0567 767 MobiDBLite consensus disorder prediction 685 701 - -
Ssu4g0567 767 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 254 429 IPR014001 -
Ssu4g0567 767 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 45 651 - -
Ssu4g0567 767 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 206 432 IPR027417 -
Ssu4g0567 767 CDD DEADc_DDX42 234 430 - -
Ssu4g0567 767 MobiDBLite consensus disorder prediction 685 767 - -
Ssu4g0567 767 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 223 251 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0567 Ssu-Chr4 9074622 9078849 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0567 220 573 Eukaryotic Initiation Factors Gene Family AT3G19760 32.773 1.93e-62 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0567 K12835 - gmx:100814854 1361.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0567 4 9074622 9078849 Ssu4g0567 4 9074622 9078849 ECH