Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0564 ATGGAGAATAAGGAGACGATGATGGGTGTGAAGAAGGAGGACCATGCGATATCTTCATCCTTCCCTTGTAATTTTCCATTATTTGATTTCTCTGAAGACAAGAGCTCTTTAGGGTTTATGGAGTTGTTGGGTGTGCAAAACTATAGTCCTCTGCTTGATTTCCCTCTAGTGCCAAACGTGTCAGTGCCTCAAACCTCTGCTGTTAAGGAACCAACTGAGACTAAGAAAGAGTGTTCCGAGGTAACGAACCTGCagcaacctgccactccaaACTCTTCATCCATTTCCTCCGCGTTCAGTGAGGCTCTCAATGACGAACGGAATAAAACTGTAGACCAAGCACATGAACACCAAAAGACAAAGGGACAGTTGAAAGCTAAGAAGACAAATCAGAAGAGACAGAGAGAACCGAGATTCGCGTTCATGACGAAAAGCGAGGTCGATCATCTGGAAGATGGGTACAGATGGAGAAAGTACGGTCAAAAAGCTGTGAAACACAGCCCCTTTCCCAGGAGCTACTATCGTTGCACCAGTGCTTCATGTAATGTGAAGAAACGCGTGGAGCGATCATTCACTGATCCAAGCATCGTGGTGACAACCTACGAAGGCCAACACACACATCCAAGCCCAGTTATGGGTCGCTCAAACAACTTTGGTTCAGTAATGGGTGGATCTGGAAACTACATGTCCCAATATTATCAGCAACAAGTCCACGTCAATGCGTTGTCTTCTTTGGGTTTCCTCTCTTCTTCGTCTTCAAAGAATGCCACTTTGACTCAAGAGAGACCGCTTTGTAGTCCAGGAGTGACTGCGTTGCTAAGTGGCCATGGGCTTCTTCAAGACGTTGTTCCTTCACATATGTTGAAAGAAGAGTAG 876 0.4463 MENKETMMGVKKEDHAISSSFPCNFPLFDFSEDKSSLGFMELLGVQNYSPLLDFPLVPNVSVPQTSAVKEPTETKKECSEVTNLQQPATPNSSSISSAFSEALNDERNKTVDQAHEHQKTKGQLKAKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKHSPFPRSYYRCTSASCNVKKRVERSFTDPSIVVTTYEGQHTHPSPVMGRSNNFGSVMGGSGNYMSQYYQQQVHVNALSSLGFLSSSSSKNATLTQERPLCSPGVTALLSGHGLLQDVVPSHMLKEE 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0564 291 SMART WRKY_cls 150 209 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu4g0564 291 Pfam WRKY DNA -binding domain 151 208 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu4g0564 291 PANTHER WRKY TRANSCRIPTION FACTOR 22 283 - -
Ssu4g0564 291 MobiDBLite consensus disorder prediction 78 104 - -
Ssu4g0564 291 SUPERFAMILY WRKY DNA-binding domain 142 210 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu4g0564 291 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 22 283 IPR044810 GO:0003700
Ssu4g0564 291 Gene3D WRKY domain 135 211 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu4g0564 291 PIRSF WRKY_txn_fact_IIc 1 291 IPR017396 GO:0003700
Ssu4g0564 291 MobiDBLite consensus disorder prediction 105 120 - -
Ssu4g0564 291 MobiDBLite consensus disorder prediction 68 135 - -
Ssu4g0564 291 ProSiteProfiles WRKY domain profile. 145 210 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0564 Ssu-Chr4 8948977 8950317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0564 21 291 WRKY Transcription Factor Family AT2G47260 47.561 7.58e-72 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu4g0564 WRKY 3.1e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0564 - - gmx:100816452 448.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0564 4 8948977 8950317 Ssu4g0564 4 8948977 8950317 ECH
Ssu4g0564 4 8948977 8950317 Ssu7g1927 7 38567078 38568769 PCT