Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0563 ATGGAGAACCCGAAGGAGCAGGCAGAGCAAAGGGTCAATTTCAGCGGAGACCCTCCAAACCCAAACCCTCACGACAATGGCAACAGCGCCTTTAGCCACTTCCCGCCCGTCGATTCTGGATACGCTCTTAACCATTCCTTGCCTCGCCCTCTCCGCAAACGCCCCTGGCATCACTCCAACCAAGGAACTTCTCCAGATCAAGTGGACGGTGCATGTCATGTAAAAGTTTATGTTGCACCTGTTCCAAGAACGGCCCCGGAGGCTGATATTCGATCTGTATTCGAAGAACATGGAACTATTGTTGAGGttgttcttttaaaagataagagAACTGGTGTACGACAAGGAAGTTGTTTTGTGAAATATGCAACATTAGATGAAGCTGACAGGGCTATTAAGGCTTTAAGCAATCAGTATACATTTCCTGGGGAATCACTTCCTGTTGTTGTCAAATTTGCTGATCGAGAACTCGAACGtcttggGGTTCGAGGGTTCTGCCGTAACATGGAAAAGAAAGATCCTTTAGAAGAGGTGGCAGATAAAGTTTTTGTTAGTTCCATCAACAAAGAAGCttcaaaaaaggaaattgaagaAATATTTTCCCCTTATGGGCACGTAGAAGATATCTTCATTGCGCACAGTCGTGGATATGcttttgtcaaattttctaATAGAGAAATGGCATTGGCTGCAATCAAAGGGCTGAATAGAACCTTCACAATGAGAGGTTGTGATCATCCATTAATTGTTCGTTTTGCGGATCCTAAGAAACCTAAGACTGGAGAATCAAGGGGCAACTATTTATCTGCGAATGcaaattttggtccttgttcTCAAGAACCAGCAATGTGGCCACTGCCAAATTTTGGTGATTCCAATACTGGAGGAAGTATTCTGCCTGTTGCCCCACATCATTCCACAATTGCACACCCACAAGTTACTTCTCATATGCAAAACTGGGAACCTGGTGCTACTGTGGTACAACAGCCATTTCCTCCCCAACAAGTGCATCCACAGTTGGCTTCAATGCCGGTGGGGTCAATTCAAGATCTAAAGTTGTCTTCTCAGCCATTTATTACTGAGGTGCAGAGACAATTGCATCCGGCAGATTCATCAGTTCAAAATATAGAGCAGCAGCTAAGTTCACAGACCGGAAGCAACCCTAATACAGTTGCTGGCAATACCCCGCCTGATATGCCTACAAGTCCCGAAGATGAAGAATTTCCAGAGTGTGACTGGAGTGAACACTACTGCCCCGATGGTTATAAGTACTATTACAACTGTGTCACTTGTGAAAGCAGATGGGAGAAGCCTGAGGAGTATGCCTTGTATGAGAAGGAATCTCAGAAGCAGCAGGAGCAGGAGCAGGAGGATAATAGCTGTAGTCTCTCACAATTGTCGTTATCTTCCTCTCAACAAGTTGCTCAAAGACAACAGGAAACAAATCATGACCACAGGCAGTCAGAAACAAGTTCTGTTGTTGGATAG 1488 0.4301 MENPKEQAEQRVNFSGDPPNPNPHDNGNSAFSHFPPVDSGYALNHSLPRPLRKRPWHHSNQGTSPDQVDGACHVKVYVAPVPRTAPEADIRSVFEEHGTIVEVVLLKDKRTGVRQGSCFVKYATLDEADRAIKALSNQYTFPGESLPVVVKFADRELERLGVRGFCRNMEKKDPLEEVADKVFVSSINKEASKKEIEEIFSPYGHVEDIFIAHSRGYAFVKFSNREMALAAIKGLNRTFTMRGCDHPLIVRFADPKKPKTGESRGNYLSANANFGPCSQEPAMWPLPNFGDSNTGGSILPVAPHHSTIAHPQVTSHMQNWEPGATVVQQPFPPQQVHPQLASMPVGSIQDLKLSSQPFITEVQRQLHPADSSVQNIEQQLSSQTGSNPNTVAGNTPPDMPTSPEDEEFPECDWSEHYCPDGYKYYYNCVTCESRWEKPEEYALYEKESQKQQEQEQEDNSCSLSQLSLSSSQQVAQRQQETNHDHRQSETSSVVG 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0563 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 74 155 IPR000504 GO:0003723
Ssu4g0563 495 PANTHER RNA BINDING PROTEIN 52 282 - -
Ssu4g0563 495 PANTHER FLOWERING TIME CONTROL PROTEIN FCA 326 475 - -
Ssu4g0563 495 Gene3D - 397 462 - -
Ssu4g0563 495 Gene3D - 168 263 IPR012677 -
Ssu4g0563 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 182 240 IPR000504 GO:0003723
Ssu4g0563 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 76 144 IPR000504 GO:0003723
Ssu4g0563 495 CDD WW 411 440 IPR001202 GO:0005515
Ssu4g0563 495 PANTHER FLOWERING TIME CONTROL PROTEIN FCA 52 282 - -
Ssu4g0563 495 SUPERFAMILY WW domain 412 444 IPR036020 GO:0005515
Ssu4g0563 495 ProSitePatterns WW/rsp5/WWP domain signature. 413 438 IPR001202 GO:0005515
Ssu4g0563 495 MobiDBLite consensus disorder prediction 365 409 - -
Ssu4g0563 495 MobiDBLite consensus disorder prediction 445 495 - -
Ssu4g0563 495 Gene3D - 66 159 IPR012677 -
Ssu4g0563 495 PANTHER RNA BINDING PROTEIN 326 475 - -
Ssu4g0563 495 ProSiteProfiles WW/rsp5/WWP domain profile. 413 440 IPR001202 GO:0005515
Ssu4g0563 495 SMART ww_5 408 440 IPR001202 GO:0005515
Ssu4g0563 495 MobiDBLite consensus disorder prediction 455 478 - -
Ssu4g0563 495 MobiDBLite consensus disorder prediction 1 68 - -
Ssu4g0563 495 SUPERFAMILY RNA-binding domain, RBD 31 153 IPR035979 GO:0003676
Ssu4g0563 495 SMART rrm1_1 75 151 IPR000504 GO:0003723
Ssu4g0563 495 SMART rrm1_1 181 251 IPR000504 GO:0003723
Ssu4g0563 495 MobiDBLite consensus disorder prediction 365 397 - -
Ssu4g0563 495 SUPERFAMILY RNA-binding domain, RBD 176 264 IPR035979 GO:0003676
Ssu4g0563 495 Pfam WW domain 411 438 IPR001202 GO:0005515
Ssu4g0563 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 180 255 IPR000504 GO:0003723
Ssu4g0563 495 MobiDBLite consensus disorder prediction 8 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0563 Ssu-Chr4 8938178 8946666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0563 76 285 Eukaryotic Initiation Factors Gene Family AT4G34110 29.596 4.44e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0563 K13207 - gmx:100776162 797.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0563 4 8938178 8946666 Ssu4g0563 4 8938178 8946666 ECH