Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0555 ATGGATGCGAAGGATATCCTGGGATTGCCCAAAAACTCATTCCCACCTCTCGAGAAGAAGTCTCGACCTCCCAAAGAGTCTCAAAGAAAACCAGATGGCATTTCGCGCGAGGTTTATGCGCTTACCGGTGGATTGGCGCCTCTTATGCCTGCAATTGAAGCCTCTCAATTGAAGAAAAAACCTCCTCCTCTCGAAAAGATCACTTGGCAGTGGCTTCCTTTCACCAGTTCTGCTCGTAAAGACAATCTTCAACTTTACCATTGGGTGCGAGTTGTCAATGGTGTTCCTCCTACTGGGGACTATTCTTTTGCCAAGTATAATAAGTCTGTTGATGTTATCAAATACACAGACGAGGAGTATGACAAGTATCTGACAGATCCTATGTGGACCAAGGAGGAGACAGATCAACTATTTGACTTGTGTGAGAGATTTGATCTCCGATTTATTGTAATAGCTGATAGGTTTCCATCATCTCGGACTGTAGAGGAATTAAAGGATAGATATTATAGTGTTTCCCGGGCTATTTTGATTGCTAGGGTTCCACCCTCTGGGGATGTTTCAGTGCATCCTCTTGTTAAGGAACCGTATAATGTTTCACAAGAAATGGAGCGAAAACGAGCACTGTCCATGGTCCTCTCTCAAACAAGGCAACAAGAACGAAGGGATGAAGAgGTTCTTGTTGAAGCAAAAAGAATAGTTGAATCACGCATTCCTCCcaagGTTGCTGAAGAGTCTCAGTTGGTTGCTTCTAACGCTGGTGCGGAAGCTACAGAGAGGGCTGTCCCTGGTGAGACCATATCTCCATCGAATGTGCAACTTCCATCAATGGTTGTGCCTTCCACATTATCAGATAACGCATCTACTCTAGCTTCTCTTCGCATGCTTCGTGTATATTTGAGAACATATGCACTTGAGCAAATGGTGCAAGCTGCAAACTCATCTGCTGGACTTCGGACTATCAAACGGGTTGAGCAAACTTTGCAAGATCTTGGGGTCAATTTGAAACCAAGGGTTCCAACTAAAGCTGTTTGTGCTGAGCATCttgaattaagaaaagaaatactcaCTTGGCTTAATCTCCAGAAACAGGTGCAATATAAAGAGGCTGAAGGTTCCTCTTTTCGTGATGGGTCATATGGTGAAACACCTGGCACGCCAAAGCATTTATATCGTGGTGGGGAGCAGGATCGGACTTTTGTTCCAGATTCAATGAATTTCGGTgTGGAAAGGGTTGGCAAAAAGGACCAAAAGCGCAAGgcaCCTGGAGCTCCTTCGGCTCATAAAAGACCTAGAAAACTAAAGGCCTCAGATCTTTAG 1317 0.4366 MDAKDILGLPKNSFPPLEKKSRPPKESQRKPDGISREVYALTGGLAPLMPAIEASQLKKKPPPLEKITWQWLPFTSSARKDNLQLYHWVRVVNGVPPTGDYSFAKYNKSVDVIKYTDEEYDKYLTDPMWTKEETDQLFDLCERFDLRFIVIADRFPSSRTVEELKDRYYSVSRAILIARVPPSGDVSVHPLVKEPYNVSQEMERKRALSMVLSQTRQQERRDEEVLVEAKRIVESRIPPKVAEESQLVASNAGAEATERAVPGETISPSNVQLPSMVVPSTLSDNASTLASLRMLRVYLRTYALEQMVQAANSSAGLRTIKRVEQTLQDLGVNLKPRVPTKAVCAEHLELRKEILTWLNLQKQVQYKEAEGSSFRDGSYGETPGTPKHLYRGGEQDRTFVPDSMNFGVERVGKKDQKRKAPGAPSAHKRPRKLKASDL 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0555 438 MobiDBLite consensus disorder prediction 18 33 - -
Ssu4g0555 438 PANTHER DNA METHYLTRANSFERASE 1-ASSOCIATED PROTEIN 1 FAMILY MEMBER 2 438 IPR027109 GO:0006281|GO:0006338|GO:0035267|GO:0043967|GO:0043968
Ssu4g0555 438 MobiDBLite consensus disorder prediction 371 438 - -
Ssu4g0555 438 SUPERFAMILY Homeodomain-like 125 172 IPR009057 -
Ssu4g0555 438 CDD SANT_DMAP1_like 129 171 - -
Ssu4g0555 438 PANTHER BNAA04G26950D PROTEIN 2 438 - -
Ssu4g0555 438 SMART sant 125 174 IPR001005 -
Ssu4g0555 438 Pfam SANT/Myb-like domain of DAMP1 101 175 IPR032563 -
Ssu4g0555 438 MobiDBLite consensus disorder prediction 408 422 - -
Ssu4g0555 438 MobiDBLite consensus disorder prediction 1 34 - -
Ssu4g0555 438 Gene3D - 98 183 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu4g0555 SANT_DAMP1_like 7.1e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0555 K11324 - gmx:100818926 812.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0555 4 8834463 8842076 Ssu4g0555 4 8834463 8842076 ECH