Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0553 ATGGAGACGGAGTACATGGCAGGTGTTCACATAACGAGAAGTTTATCAGAGAATGGGTCGTCAACAACATATGGAAGTGAAGAGGAGATGTCAATAACCAAAGGTCCATGGACAGAGGGAGAGGATTCTGTTCTCTTCAATTACATCACTGTCCACGGCGAAGGTCACTGGAACTCTGTCGCTCGCTATACAGGTCTAAAACGAACGGGCAAAAGCTGCAGATTAAGATGGTTGAACTACTTGCGCCCAAACGTTCGACGTGGGAACATTACCCTCCAAGAACAGCTCTTGATTCTTGACCTCCATTCCCGTTGGGGCAACCGGTGGTCGAAAATAGCTGAACATTTACCGGGTAGAACAGACAATGAGATTAAAAACTATTGGAGAACAAGAGTGGTAAAGCAGGCTAAGCAACTCAAATGTGATGTGAACAGCAAGCAATTCAGAGACACGTTGCGTTTTGTGTGGATGCCACGTATGCTTGAGCGGATCCAGGCTCAAGCCTCATCAAACCATGCCCAAACCACCTTAATCTCCAACACTCAAGCACACAGCGACCCTTGTGGAGCCACCAACCCCAGTTTGTTGTTGTCAGAGGCCTCATCAGCGGTTGATGTCCACGCGCCTTCTCTTTCTGACTCTAATGCATCTTACAATTTAAGGGGTGGTGGTAGCTGCTCATCGTATAGTGCAGAGGAAGGTACCACCCTATGGCAGCAGAGAGAGTATTCAGACATACCAGGCAATGGTTTCGGTGGTGCGGACTTGTGGACGGATGAAAATATATGCTTTTTGCAGCAGCAGCTAGCTGATGATTTCTGA 822 0.4769 METEYMAGVHITRSLSENGSSTTYGSEEEMSITKGPWTEGEDSVLFNYITVHGEGHWNSVARYTGLKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILDLHSRWGNRWSKIAEHLPGRTDNEIKNYWRTRVVKQAKQLKCDVNSKQFRDTLRFVWMPRMLERIQAQASSNHAQTTLISNTQAHSDPCGATNPSLLLSEASSAVDVHAPSLSDSNASYNLRGGGSCSSYSAEEGTTLWQQREYSDIPGNGFGGADLWTDENICFLQQQLADDF 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0553 273 ProSiteProfiles Myb-like domain profile. 29 81 IPR001005 -
Ssu4g0553 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 82 136 IPR017930 -
Ssu4g0553 273 CDD SANT 36 81 IPR001005 -
Ssu4g0553 273 PANTHER MYB TRANSCRIPTION FACTOR-RELATED 20 197 - -
Ssu4g0553 273 Gene3D - 33 86 - -
Ssu4g0553 273 Gene3D - 91 132 - -
Ssu4g0553 273 SUPERFAMILY Homeodomain-like 31 128 IPR009057 -
Ssu4g0553 273 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 20 197 IPR044676 GO:0003700|GO:0006355|GO:0043565
Ssu4g0553 273 Pfam Myb-like DNA-binding domain 34 81 IPR001005 -
Ssu4g0553 273 Pfam Myb-like DNA-binding domain 87 130 IPR001005 -
Ssu4g0553 273 CDD SANT 91 130 IPR001005 -
Ssu4g0553 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 81 IPR017930 -
Ssu4g0553 273 SMART sant 86 134 IPR001005 -
Ssu4g0553 273 SMART sant 33 83 IPR001005 -
Ssu4g0553 273 ProSiteProfiles Myb-like domain profile. 82 132 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0553 Ssu-Chr4 8761874 8762911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0553 18 272 MYB Transcription Factor Family AT2G47190 49.057 2.33e-81 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu4g0553 Myb_DNA-binding 5.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0553 K09422 - gmx:100819467 426.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0553 4 8761874 8762911 Ssu4g0553 4 8761874 8762911 ECH
Ssu4g0553 4 8761874 8762911 Ssu7g1917 7 38396344 38397354 PCT