Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0548 ATGGAAGAAACATTTGTACCCTTGGAAGGAATCAAGAATGATCTGAGAGGAAGGTTGATGTGCTACAAGCAAGATTGGTTAGGTGGAATCAGAGCAGGTTTAAGGATTTGGGCCCCCACCACATACATATTCTTTGCTTCCGCTATACCTGTCATTTCATTCGGGGAACAACTAGAGCGAGATACTGATGGTGTTCTAACTGCTGTTCAAACATTGGCATCCACTTCAATATGTGGCATTATACACTCAATCCTTGGAGGTCAACCTTTGCTGATTTTAGGAGTGGCGGAGCCTACCGTGATCATGTACACATTCATGTTCAATTTTGCAAAAGAGAGACCAGAGTTGGGCCGGAATTTGTTTCTGGCATGGACTGGATGGGTATGTGTCTGGACTGCACTGTTGCTATTCTTACTGGCCATCTTAGGGGCTTGCTCTATAATCAACAGGTTTACCCGTATAGCAGGAGAGTTGTTTGGCCTGCTTATTGCAATGCTCTTCATGCAGCAAGCTATCAAAGGACTGGTGGATGAGTTTCGCATACCAGAGAGAGAAAATCCAAAATCAATTGAGTTTATACCTTCATGGAGGTTTGCTAATGGGATGTTTGCTTTGGTCCTTTCGTTTGGCCTTCTCCTCACTGCATTAAGAAGCAGAAAGGCTAGGTCATGGCGTTATGGTGCCGGTTGGCTTCGCAGCCTAATAGCTGACTATGGTGTGCCACTTATGGTCCTAGTTTGGACAGGTGTGTCCTACATACCAGCTGGAAGTGTTCCACATGGTATTCCAAGGCGCCTGTTCAGCCCAAATCCATGGTCACCGGGTGCATATGAGAATTGGACTGTTGTTAAGGATATGGTCCATGTTCCTGTTGTCTACATAATCGGAGCATTTATCCCAGCAACCATGATTGCAGTGCTTTATTACTTTGACCATAGTGTGGCATCCCAGCTTTCCCAGCAGAAAGAGTTCAATTTGAGAAAGCCATCTTCTTACCATTACGACTTGCTCCTTTTGGGTTTTTTGACCTTAATGTGTGGCCTTATTGGAATTCCTCCTTCAAATGGAGTCATACCACAATCTCCAATGCACACAAAGAGTCTGGCAACTCTTAAACATCAGTTGCTTCGTAACAAACTGGTGGTAACCGCACGAAAAAGTATGGGAAAGAATGCTAGTTTAGGACAGTTATATGGCAACATGCAAGAAGCCTACCATCAAATGCAGACGCCTCTTATTTACCAGGACCCCTCTGCTCGAGCACAGGGACTAAGAGAACTTAAAGAATCAACCATTCAAGCAGCTACCAGTATGGGGAACATGGATGCCCCAGTAGATGAGACTATATttgatgttgagaaagaaatagaCGACCTGCTTCCTGTTGAGGTAAAGGAACAGCGTCTCAGTAACTTGCTTCAAGCAATAATGGTGGGAGGATGCGTTGCGGCCATGCCTTTCCTCAAGAAGATCCCAACCTCAGTCCTTTGGGGCTACTTTGCCTTCATGGCCATTGAAAGTTTGCCAGGAAACCAGTTTTGGGAAAGGATCCTATTACTCTTCACTGCACCAAGCAGAAGATACAAGGTGCTTGAGGACTACCATGCTACTTTTGTAGAAACAGTTCCTTTCAAGACAATAGCAACATTCACCCTTTTCCAAATCGTTTATCTTCTTGGATGTTTTGGACTAACATGGGTTCCTATTGCTGGGGTCATGTTTCCTATGATGATCATGCTCTTAGTTCCGGTAAGACAGTACTTTCTCCCCAAATTTTTCAAAGGGGCACACCTTCAAGACTTGGATGCAGCAGCGTATGAAGAGCAAACAGCTTTACCATTCAACCTTGTAACGCAATCAGAGTTTGGAGCTGGTGCTTCCCATGTTGAAGAAGGTGAGATCCTAGATGAAGTTATCACTAGAAGCCGTGGCGAGTTTAGGCACACTAGCAGTCCAAAGATCACAAGCTCCACCCCAACACCAAGAACTGATCCTAAAAGCCATCTTAGCCCGCGTCTATCTTTTAGTTCTCGAGTGGGTGACCTCAAAACTGAGCAGAGTCCTCGGTCTGGTGCAAGAGGTTCCCTCAGCCCAAAGGCTGGAGAAGTGAGATTATCAAATCTGGGAAGAAGTCCTCTTAATCCAGATTCTAAGCAGCAGGACCACAACTAA 2172 0.4475 MEETFVPLEGIKNDLRGRLMCYKQDWLGGIRAGLRIWAPTTYIFFASAIPVISFGEQLERDTDGVLTAVQTLASTSICGIIHSILGGQPLLILGVAEPTVIMYTFMFNFAKERPELGRNLFLAWTGWVCVWTALLLFLLAILGACSIINRFTRIAGELFGLLIAMLFMQQAIKGLVDEFRIPERENPKSIEFIPSWRFANGMFALVLSFGLLLTALRSRKARSWRYGAGWLRSLIADYGVPLMVLVWTGVSYIPAGSVPHGIPRRLFSPNPWSPGAYENWTVVKDMVHVPVVYIIGAFIPATMIAVLYYFDHSVASQLSQQKEFNLRKPSSYHYDLLLLGFLTLMCGLIGIPPSNGVIPQSPMHTKSLATLKHQLLRNKLVVTARKSMGKNASLGQLYGNMQEAYHQMQTPLIYQDPSARAQGLRELKESTIQAATSMGNMDAPVDETIFDVEKEIDDLLPVEVKEQRLSNLLQAIMVGGCVAAMPFLKKIPTSVLWGYFAFMAIESLPGNQFWERILLLFTAPSRRYKVLEDYHATFVETVPFKTIATFTLFQIVYLLGCFGLTWVPIAGVMFPMMIMLLVPVRQYFLPKFFKGAHLQDLDAAAYEEQTALPFNLVTQSEFGAGASHVEEGEILDEVITRSRGEFRHTSSPKITSSTPTPRTDPKSHLSPRLSFSSRVGDLKTEQSPRSGARGSLSPKAGEVRLSNLGRSPLNPDSKQQDHN 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0548 723 MobiDBLite consensus disorder prediction 640 723 - -
Ssu4g0548 723 Pfam HCO3- transporter family 8 180 IPR011531 GO:0006820|GO:0016021
Ssu4g0548 723 Pfam HCO3- transporter family 462 552 IPR011531 GO:0006820|GO:0016021
Ssu4g0548 723 Pfam HCO3- transporter family 202 373 IPR011531 GO:0006820|GO:0016021
Ssu4g0548 723 MobiDBLite consensus disorder prediction 649 693 - -
Ssu4g0548 723 PANTHER ANION EXCHANGE PROTEIN 1 703 IPR003020 GO:0005452|GO:0006820|GO:0016020
Ssu4g0548 723 PANTHER BORON TRANSPORTER 2-RELATED 1 703 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0548 Ssu-Chr4 8611266 8614913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0548 1 694 Antiporters AT3G62270 82.878 0.0 1172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0548 K24194 - gmx:100776705 1380.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0548 4 8611266 8614913 Ssu4g0548 4 8611266 8614913 ECH