Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0546 ATGTTCAGAATGAAGCATTCTCATATTTTACCACAAGCATTCTGTATATTATTCCTTACTTTAGTTCTTCTTGTCCAAGCTAGGCATCATTCTCATACAAAACACAAGCACTCACATTCTCATAAATCATCTAAAACTTCACCTCCTAGCTCTCCTCGTAACGAGAACTGTAACAATGGCTCTGGCATTTTTGATGTACGAACATTTGGAGCAATAGGAGATGGAAAAACAGATGATACAGAGTCATTCAAGATGGCATGGGACACTGCCTGCCAAAGTGAATCAGCAGTTAATGTCATCCTTGTACCCCAAGGTTTCTCCTTCCTCACTCAGTCCACTATCTTCACTGGTCCTTGTCAAGGTGGCATGGTGTTGAAGGTTGATGGCACTCTAATGCCACCTGATGGACCTGAATCTTGGCCTGAGAACAACAGTAGGCACCAATGGTTGGTCTTTTATAGAATCAATGGAATGTCACTGGAAGGAGGTGGTTTAATAGATGGGAGAGGAGAAAAATGGTGGGACCTTCCCTGTAAGCCTCACAAGGGACCTCATGGGACAACACTTCCTGGTCCTTGTGATAGCCCAATTGCCATAAGGTTTTTTATGAGTTCCAACTTGACTGTGCAAGGACTTAGGATAAAGAACAGCCCCCAGTTCCATTTCAGATTTGATGGCTGCAAAAACGTCCATATAGAATCAATCTACATAACAGCTCCAAAACAAAGCCCCAATACTGATGGAATTCACATAGAAAATACCGATGAcgtgaaaatatataattctgtTATTTCTAATGgtGATGATTGTGTATCCATTGGATCCGGCTGCTATGATGTCGATGTTAAGAACATTACATGTGGACCTGGTCATGGAATTAGCATTGGTAGTCTGGGGAATCACAACTCTCGAGCCTGTGTTTCAAACATTACCGTGAGAGACTCATTTATAAAAGTGACAGATAATGGGGTCAGGATCAAGACTTGGCAAGGTGGATCAGGATCGGTATCAGGAGTGACATTCAGCAATATCCACATGGTTAGTGTAAGAAATCCAATCATAATTGACCAGTTCTATTGCCTCACTAAGGATTGCACCAACAAGACCTCTGCAGTATCtgtatcaaatattatttacacaAACATAAAGGGAACATATGATATAAGGAGCCCGCCTATGCGTTTTGCCTGCAGTGACTCTGTCCCATGCACTAACTTAACACTCTCAGATATTGAGCTTCTTCCCGCTCAAGGAGATATAGTGCATGATCCTTTCTGTTGGAATGCTTATGGAGATTTAGAGACACTAACCATTCCACCAGTCGCTTGCTTGCTGGAGGGCACTCCTCAATCTGTGATAGACTTTGACATAACTCGTTGCTGA 1383 0.4136 MFRMKHSHILPQAFCILFLTLVLLVQARHHSHTKHKHSHSHKSSKTSPPSSPRNENCNNGSGIFDVRTFGAIGDGKTDDTESFKMAWDTACQSESAVNVILVPQGFSFLTQSTIFTGPCQGGMVLKVDGTLMPPDGPESWPENNSRHQWLVFYRINGMSLEGGGLIDGRGEKWWDLPCKPHKGPHGTTLPGPCDSPIAIRFFMSSNLTVQGLRIKNSPQFHFRFDGCKNVHIESIYITAPKQSPNTDGIHIENTDDVKIYNSVISNGDDCVSIGSGCYDVDVKNITCGPGHGISIGSLGNHNSRACVSNITVRDSFIKVTDNGVRIKTWQGGSGSVSGVTFSNIHMVSVRNPIIIDQFYCLTKDCTNKTSAVSVSNIIYTNIKGTYDIRSPPMRFACSDSVPCTNLTLSDIELLPAQGDIVHDPFCWNAYGDLETLTIPPVACLLEGTPQSVIDFDITRC 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0546 460 MobiDBLite consensus disorder prediction 32 58 - -
Ssu4g0546 460 ProSitePatterns Polygalacturonase active site. 284 297 IPR000743 GO:0004650|GO:0005975
Ssu4g0546 460 PANTHER - 9 450 - -
Ssu4g0546 460 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 9 450 - -
Ssu4g0546 460 Gene3D - 51 446 IPR012334 -
Ssu4g0546 460 SMART pbh1 227 253 IPR006626 -
Ssu4g0546 460 SMART pbh1 254 275 IPR006626 -
Ssu4g0546 460 SMART pbh1 277 297 IPR006626 -
Ssu4g0546 460 SMART pbh1 336 357 IPR006626 -
Ssu4g0546 460 SMART pbh1 307 328 IPR006626 -
Ssu4g0546 460 Pfam Glycosyl hydrolases family 28 91 413 IPR000743 GO:0004650|GO:0005975
Ssu4g0546 460 SUPERFAMILY Pectin lyase-like 63 450 IPR011050 -
Ssu4g0546 460 MobiDBLite consensus disorder prediction 44 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0546 Ssu-Chr4 8546845 8549128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0546 58 460 Glycoside Hydrolase AT1G02460 71.182 0.0 616
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0546 - - gmx:100778836 852.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0546 4 8546845 8549128 Ssu4g0546 4 8546845 8549128 ECH
Ssu7g1911 7 38235268 38237357 Ssu4g0546 4 8546845 8549128 ECH
Ssu6g0288 6 4515833 4519047 Ssu4g0546 4 8546845 8549128 ECH
Ssu4g0546 4 8546845 8549128 Ssu7g1911 7 38235268 38237357 PCT