Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0539 ATGGACGATTGTTGTGCCGTTTGCGCTGAGCCTTTGGAATGGGTTGCGTACGGACCCTGTTTGCACCGGGAGGTGTGTTCCACGTGCGTCGCTCGCCTCCGTTTCATCTGCGATGATCGCCGTTGCTGCATCTGCAAGACCGAATGCAACCTCGTATCCGTCACCAAGGCTCTTGGAGATTACACGAGGATGGTTAATGACTTCTCGACCCTTCCTTCGGAGGCAAGGGAGGGCAAGGTTGGATCATACTGGTACCATGAGGATACAAATGCATTTTTTGATGATGTGGACCATTACAAGATGATCAAGGCTATGTGCAGGCTTTCATGCAGTGTATGTGACAAGACAGAGGAGCAACCACAGGATGCTGCTTCAAGGCGGCGAGCAAAGTTTAGGAATATAGGGCAGTTGAAGGGTCATTTATTCCACCGTCATAAGTTGCATATGTGCAGTTTGTGTTTGGAGGGAAGGAagGTTTTTATATGTGAGCAAAAACTATATACCAGAGCACAGTTGAATCAACACATAAGCACGGGTGATTCTGAGGTGGATGGAAGTGAGAGTGAGAGAGGTGGTTTCATGGGCCATCCCATGTGTGAATTCTGCAGAACCCCATTTTATGGGGACAACGAACTATACATGCATATGTCTACAGAACATTATACTTGTCATATATGCCAAAGGCAGCATCCAGGGCACTATGAATACTATAAGAATTATGATGACCTAGAGATCCACTTCCGTCAAGAGCACTTCTTATGTGAAGATGAGGCTTGCCTTGCTAagaaatttgttgtttttcaatCGGAAGCAGAGATGAAGAGGCATAATGCTGTCGAACATGGAGGGAGAATGTCACGGTCTAAGCGTAATGCTGCTCTTCAGATACCAACTAGCTTCCGATACAGACATGGTAATGAACATGAGCAACGCCGTGGGAGAGGTCGTACATTTCGTCGTGATTTTCCTCAAAATCAACTTTCTATGGCCATTGAAGCTAGTTTGGAAACAGCTAATGCAGAGCAAACGTTTCATGATCAATCGGTGTCAAGTAGTGGGCAAGTTGCTGTTGATGATGGGAATGCTGATATTGATTCTCTCGTTCTGCCATTTGAATCATTAGTTGCAGCAGGTTCTGAATCATCTTCAAGATACCTTCAAGCCTTGGGGCATAGCTCTAGGAATGCACCTCTGGAGGATTCTTCCTTTCCACCACTACCCATAAATTCCAGCAATGGCCAGCAAAGGTCCAAACATGAATTGGAAGGTTCATCTAGTAACACTATGGCTGCACATCTGCGTCGGCATCGCAATAGAACTGTATCTGTTATTAATTCTGGTAATGCTTGGCCAGCGGCAGGTCGTGGACCGGTACAATCATCAAGTAATCCTTCGCAATCTAAACTGGCAACAAATAATGCTCTTGGACTGTCTCGTAATACTGGGCAGATGAAGACTGTAACTAACAGTGGACTTACGCCATCAACTTATGCTGGTTCTATTCAGGCTACGCAGAAAACTTCTCATGGACAATTACCTGCTGGTTCATCAAGGGACACGCGTGACAATGGCAGAATCGTTCACTCTGCATCTGCTCCAAATCTCATGGAGAACAACTCTGTTGAGGTTTCAATTTCTGATTTTCCTCCAGTTTCTGCTGCACAAGTTAGTAAGTTACCTGCGAGCAGCCAGTCTTCATTGAACGTGGAAAATGTTCAGTCTGCTAACAAGTCCATGGTTGAAAAGATTCGTGGTGCTCTTGATTTTGATGAAGAAAGATACACTATATTTAAAGACATATCTGCCCAATATCGCCAAGGCACAATAGATACAGTTACATATCTGGACTATGTGCAGCAGTTTGGCTTGTCTCATCTTGTGCTTGAGTTGGCAAGACTATGCCCGGATTCTCGGAAGCAGAAAGAGCTTGTTGAGGCTTACAGTGCTAGTTTGCAAAGAAATGCTTTACCAGAAAATAACTTGGTTCGAGGCAGCCACAGTACCCATCGCAAAGACAGTAATGTAAACAAGAAAGGTAAAGGTAAGTCTGTAGATGGTAGGGGGAGCAACTCCACAGAGAAATTAGCTGATAACTTTTTAAGCACTGTACATCAGCTACAGACAAGTTATAAACCTTCGGAAGAGAAGGTGGAGGTGCTATCAAGGGGTGATTACCGTGGTGATGGAggcaaattaaaaatcaagcaGCAGAGTGATACAAATTCTGGTAGTCAACCTATGATGAAGCTTTGTGGGCAGACTGAAACATCAAATGgcagtttatctaatcaaaatagAGAGGATGGGGGTGGTGGGAACAAACAACGCAAGAAAACTTCTAAGTTCCTGAGAGTGCGTCTTGGTGATGGTTCTGCTTCGGCCCTTCTTGATCTTGAAAACTCCAGCACCGAAGCAGATCCTGGAATGACAGACAGATCAGAAGGTAACAGCGAAGACTCTGGAGGAGGACCTCCTGTGCGAGGTGTTTGGCGAAGTGGGGGAGGTCAGAGACTCTTTTCCTAA 2523 0.4435 MDDCCAVCAEPLEWVAYGPCLHREVCSTCVARLRFICDDRRCCICKTECNLVSVTKALGDYTRMVNDFSTLPSEAREGKVGSYWYHEDTNAFFDDVDHYKMIKAMCRLSCSVCDKTEEQPQDAASRRRAKFRNIGQLKGHLFHRHKLHMCSLCLEGRKVFICEQKLYTRAQLNQHISTGDSEVDGSESERGGFMGHPMCEFCRTPFYGDNELYMHMSTEHYTCHICQRQHPGHYEYYKNYDDLEIHFRQEHFLCEDEACLAKKFVVFQSEAEMKRHNAVEHGGRMSRSKRNAALQIPTSFRYRHGNEHEQRRGRGRTFRRDFPQNQLSMAIEASLETANAEQTFHDQSVSSSGQVAVDDGNADIDSLVLPFESLVAAGSESSSRYLQALGHSSRNAPLEDSSFPPLPINSSNGQQRSKHELEGSSSNTMAAHLRRHRNRTVSVINSGNAWPAAGRGPVQSSSNPSQSKLATNNALGLSRNTGQMKTVTNSGLTPSTYAGSIQATQKTSHGQLPAGSSRDTRDNGRIVHSASAPNLMENNSVEVSISDFPPVSAAQVSKLPASSQSSLNVENVQSANKSMVEKIRGALDFDEERYTIFKDISAQYRQGTIDTVTYLDYVQQFGLSHLVLELARLCPDSRKQKELVEAYSASLQRNALPENNLVRGSHSTHRKDSNVNKKGKGKSVDGRGSNSTEKLADNFLSTVHQLQTSYKPSEEKVEVLSRGDYRGDGGKLKIKQQSDTNSGSQPMMKLCGQTETSNGSLSNQNREDGGGGNKQRKKTSKFLRVRLGDGSASALLDLENSSTEADPGMTDRSEGNSEDSGGGPPVRGVWRSGGGQRLFS 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0539 840 PANTHER EBR1 1 839 - -
Ssu4g0539 840 CDD RING-HC_ZNF598 5 46 IPR041888 -
Ssu4g0539 840 ProSiteProfiles Zinc finger RING-type profile. 5 46 IPR001841 -
Ssu4g0539 840 MobiDBLite consensus disorder prediction 657 693 - -
Ssu4g0539 840 MobiDBLite consensus disorder prediction 734 769 - -
Ssu4g0539 840 MobiDBLite consensus disorder prediction 715 733 - -
Ssu4g0539 840 MobiDBLite consensus disorder prediction 447 524 - -
Ssu4g0539 840 MobiDBLite consensus disorder prediction 664 684 - -
Ssu4g0539 840 MobiDBLite consensus disorder prediction 394 426 - -
Ssu4g0539 840 MobiDBLite consensus disorder prediction 707 840 - -
Ssu4g0539 840 PANTHER ZINC FINGER PROTEIN 598 1 839 IPR044288 GO:0061630|GO:0072344
Ssu4g0539 840 SMART c2h2final6 252 281 IPR013087 -
Ssu4g0539 840 SMART c2h2final6 197 220 IPR013087 -
Ssu4g0539 840 SMART c2h2final6 221 251 IPR013087 -
Ssu4g0539 840 SMART c2h2final6 108 145 IPR013087 -
Ssu4g0539 840 MobiDBLite consensus disorder prediction 455 518 - -
Ssu4g0539 840 MobiDBLite consensus disorder prediction 795 817 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0539 1 840 C2H2 Transcription Factor Family AT3G62240 52.028 0.0 844
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0539 K22381 - gmx:100799878 1512.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0539 4 8448417 8452255 Ssu4g0539 4 8448417 8452255 ECH