Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0535 ATGAGTTGTTTCGGCTGTTGTGAAGAAGATGACTTCCAGAAGACTGCCGAAAGTGGAGGACAGCATGTGGTAAAAAACTCAACAGGAAATGATGGAAATGGTCATGCTTCTGAAACTGCAAAGCAGGGCACTCAAACTGTTAAAATTCAGCCCATTGAAGTTCCTGAAATACCGGTGGATGAACTAAAAGAAATTACAGATAGCTTTGGAGAAAGTTCTTTGATTGGAGAGGGATCCTATGGAAGAGTATATTATGGTGTTTTGAAAAGTAGGCAGGCTGCGGCAATCAAGAAATTAGATGCCAGTAAACAGCCTGATGAGGAATTTTTAGCCCAGGTTTCAATGGTTTCACGGCTGAAGCATGACAATTTTGTTCAATTGCTTGGTTACTGCATTGATGGAAACTCCCGAGTTCTTGCCTATGAGTTTGCATCTAATGGGTCTCTTCATGACATTTTACATGGCAGAAAAGGTGTTAAAGGAGCACAGCCTGGTCCTGTTCTAACATGGACACAGAGAGTTAAAATTGCTGTAGGGGCTGCCAAAGGGCTTGAGTACTTGCATGAGAGGGCTGATCCGCACATTATCCACCGCGACATCAAGTCAAGCAATGTATTAAtctttgatgatgatgttgctaaaattgcagattttgaTTTGTCAAATCAGGCTCCTGACATGGCAGCACGTCTCCATTCCACCCGTGTCCTTGGAACCTTTGGTTATCATGCACCAGAATATGCAATGACTGGTCAATTGAATGCTAAGAGTGATGTATACAGCTTTGGTGTTGTCCTTCTGGAACTTTTGACTGGAAGGAAACCTGTTGATCATACACTACCACGTGGGCAGCAGAGCCTGGTTACTTGGGCTACACCAAGACTCAGTGAGGATAAAGTCAGACAGTGTGTAGATGCAAGACTAGGAGGAGATTACCCACCCAAAGCTGTTGCTAAGATGGCTGCTGTTGCTGCCCTGTGCGTGCAATATGAAGCTGATTTCAGACCAAACATGAGCATTGTAGTCAAAGCTCTTCAGCCTTTGTTGAGCGCAAGACATGGGCCTGCTGGTGAAACTCCAAACTAA 1086 0.43 MSCFGCCEEDDFQKTAESGGQHVVKNSTGNDGNGHASETAKQGTQTVKIQPIEVPEIPVDELKEITDSFGESSLIGEGSYGRVYYGVLKSRQAAAIKKLDASKQPDEEFLAQVSMVSRLKHDNFVQLLGYCIDGNSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLTWTQRVKIAVGAAKGLEYLHERADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPRLSEDKVRQCVDARLGGDYPPKAVAKMAAVAALCVQYEADFRPNMSIVVKALQPLLSARHGPAGETPN 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0535 361 Pfam Protein tyrosine and serine/threonine kinase 74 345 IPR001245 GO:0004672|GO:0006468
Ssu4g0535 361 Gene3D Phosphorylase Kinase; domain 1 30 143 - -
Ssu4g0535 361 SMART serkin_6 69 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0535 361 ProSiteProfiles Protein kinase domain profile. 69 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0535 361 Gene3D Transferase(Phosphotransferase) domain 1 144 355 - -
Ssu4g0535 361 MobiDBLite consensus disorder prediction 19 46 - -
Ssu4g0535 361 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Ssu4g0535 361 MobiDBLite consensus disorder prediction 17 46 - -
Ssu4g0535 361 CDD STKc_IRAK 75 348 - -
Ssu4g0535 361 PIRSF ILK 10 353 - -
Ssu4g0535 361 SUPERFAMILY Protein kinase-like (PK-like) 46 345 IPR011009 -
Ssu4g0535 361 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 359 - -
Ssu4g0535 361 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 359 - -
Ssu4g0535 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0535 Ssu-Chr4 8404250 8406725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0535 61 353 Receptor kinase-like Gene Family AT3G58690 50.169 6.45e-89 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Ssu4g0535 PK_Tyr_Ser-Thr 3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0535 K13436 - gmx:100813950 695.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0535 4 8404250 8406725 Ssu7g1899 7 38073565 38075402 PCT