Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0533 ATGGGTGGCGATGCAGGCGCAGCGAACTCCACGCCATACTCGGCGGCGAAGATTTCGGTGTGGTGGGACATTGAGAACTGTCGTGTTCCCAAAGGCCACGACGCCCACTCCATCGCCCAGAACATAACCTCCGCGCTGGTGAACATCAACTACGGCGGCCCCGTCTCCATCTCCGCCTACGGCGACACCAACCGCATTCCCCCGCCCGTCCAGTACGCCCTCTCCAGCACCGGCGTTTCCCTCAACCACGTCCCCACCGGTGCGAAAGACGCGAGCGACAAGAAGATTCTAGTAGATATGCTGTTGTGGGCCGTAGACAATCCCGCCCCCGCAAACTATTTGCTGATATCTGGCGATAGAGACTTCTCCAACGCGCTGCACCAACTCAGCATGAGAAAGTACAACATTCTCCTCGCCCAGCCGCCGCAAGTTTCTCCGTCCCTCGCCGCCGCCGCCAAAGTCGTGTGGCTCTGGACAACCCTCTCCGCCGGCGGCATCCCTCTCTTCATCGCCGACTCCGACTCCTCCTCCGGTAAACCCGCTGAACCCATTCAATTAAAATCCAAACCCAAATACGTTAGGAAAAGCACCACAATAACCCCAACCTCGTCTCTTCAAGTGCCTAACGAGAGTAAGAGTAAGAATAAGAATAGCGATGACCCTAATCCGGAACAGCCACAACCACAGAGAAAGTTGTTCTTCGGAGCTCCTCATGAATTCTTTGCCAGTAAATGCAATAACCCCGTAATCCCAACTAGTTCTAAGTCGAGTAATGAAATTCCTCATGATTCACGCCATAGCCCTTTGAGGCAAAAGCTGAATGTTCGTGTTGGGAATGCTACTACTACTACTCATCAAGAAAACAGGGATGATTCTAGAGCGACCACTAGCCATCCTGAGTATGTGCAGGGTCTTATTGATGTTATTCTGAGGACCCTGAACTTTCTCAGGGTTGAAATGATCATGTCCACCGAAGCGAATATAACTGATTGCATTCGTTATGGGGATCCCAAGTATCAGACAATTGATGTCAGGAAGGCCTTGGATTTTGCCATAGAGCAACGTAGGGTGGTGAAACGAGTCTTGGGGGCGTTGCATTTGTATCTTGGTAGAAATGAGACGCTCTGGAAGTGTGTGAGTCATATAGGTGGTCATCCTAGTGATTTTCCGCAAGCAACATGGGATAGGATTATGGAGTTCCTTACTTCTTCATCAGGGAGATCATTGATTTTGGTATCGCGTTGCAGATATGAAGCATGTTTGGTTCTAAGGAGATCGTGCCTCGGAGAGCTTGTATTAGGGGATGTGCTTAAAATTCTGGAGATGATGATCACGGTCAAGAAATGGATTATACATCACCATTGTGGGTGGCAGCCGATTACCATTACGCTTATGGAGAGTAAAGGGGATGCCGTGTTGATCTAG 1425 0.5039 MGGDAGAANSTPYSAAKISVWWDIENCRVPKGHDAHSIAQNITSALVNINYGGPVSISAYGDTNRIPPPVQYALSSTGVSLNHVPTGAKDASDKKILVDMLLWAVDNPAPANYLLISGDRDFSNALHQLSMRKYNILLAQPPQVSPSLAAAAKVVWLWTTLSAGGIPLFIADSDSSSGKPAEPIQLKSKPKYVRKSTTITPTSSLQVPNESKSKNKNSDDPNPEQPQPQRKLFFGAPHEFFASKCNNPVIPTSSKSSNEIPHDSRHSPLRQKLNVRVGNATTTTHQENRDDSRATTSHPEYVQGLIDVILRTLNFLRVEMIMSTEANITDCIRYGDPKYQTIDVRKALDFAIEQRRVVKRVLGALHLYLGRNETLWKCVSHIGGHPSDFPQATWDRIMEFLTSSSGRSLILVSRCRYEACLVLRRSCLGELVLGDVLKILEMMITVKKWIIHHHCGWQPITITLMESKGDAVLI 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0533 474 Gene3D - 13 160 - -
Ssu4g0533 474 MobiDBLite consensus disorder prediction 191 212 - -
Ssu4g0533 474 PANTHER LIMKAIN B LKAP 10 456 IPR024768 GO:0005777|GO:0010468|GO:1903231
Ssu4g0533 474 MobiDBLite consensus disorder prediction 172 230 - -
Ssu4g0533 474 Pfam NYN domain 17 153 IPR021139 GO:0004540
Ssu4g0533 474 CDD PIN_limkain_b1_N_like 17 141 - -
Ssu4g0533 474 Pfam OST-HTH Associated domain 412 467 IPR025677 -
Ssu4g0533 474 PANTHER ENDONUCLEASE OR GLYCOSYL HYDROLASE WITH C2H2-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN-RELATED 10 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0533 Ssu-Chr4 8369921 8371718 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0533 13 173 C2H2 Transcription Factor Family AT5G61190 73.292 1.92e-74 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0533 - K17573 gmx:100819329 634.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0533 4 8369921 8371718 Ssu4g0533 4 8369921 8371718 ECH