Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0529 ATGAATATTGCAGCCAACACCGCTGACGGGTTCATTGCCAAGGCGATGACATTCGAGAACACAGCTGGTGCCAAGGGTCACCAAGCCGTGGCTTTCAGGAACCAGGGAGACATGTCAGCCGTCTTGGATTGCCACTTTTCGGGTTACCAAGATACCTTGTACGCTCAATCCAACAGGCAATTCTACCGCAACTGCGTCATCTCCGGCACCATTGACTTCATCTTTGGCTCGTCAACCACCTTGATCCAGCACTGCGTGATCATCGTGAGGAAGCCCCTCGACAACCAGTTCAACACAGTCACCGCGGACGGCTCAGAGAGGCAGAACATGAACACAGGAATTGTGATCCAGGACTGCGAGATCATCCCGGAAGCAGCACTCTTCCCTGTGAGGTTCCAAATCAAGTCGTACTTGGGCAGGCCATGGAAACAGTACGCAAGGACCGTGGTCATGGAATCCAACATCGGTGACTTCATTCACCCCGAGGGGTGGTCCCCATGGGCAGGCTCACTCTACTTGGACACCTTGTACTATGCCGAGCACAACAACGTTGGACCTGGTGCCGGCGTTAACGGAAGGATCAAGTGGAAGGGTTACCATGGCCTCATTAGTCGCGATGAAGCTTCTAAGTTCACCGCTGCCAATTTCCTCAGGGCTGGACCCAACTCTGGAACTAATTGGATTGCGGCTAGTCAGGTTCCTCACGCCCTTGGCTTCGTCAAAGcttga 729 0.5336 MNIAANTADGFIAKAMTFENTAGAKGHQAVAFRNQGDMSAVLDCHFSGYQDTLYAQSNRQFYRNCVISGTIDFIFGSSTTLIQHCVIIVRKPLDNQFNTVTADGSERQNMNTGIVIQDCEIIPEAALFPVRFQIKSYLGRPWKQYARTVVMESNIGDFIHPEGWSPWAGSLYLDTLYYAEHNNVGPGAGVNGRIKWKGYHGLISRDEASKFTAANFLRAGPNSGTNWIAASQVPHALGFVKA 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0529 242 Gene3D - 2 239 IPR012334 -
Ssu4g0529 242 PANTHER PECTINESTERASE 4 240 - -
Ssu4g0529 242 SUPERFAMILY Pectin lyase-like 5 219 IPR011050 -
Ssu4g0529 242 Pfam Pectinesterase 5 218 IPR000070 GO:0030599|GO:0042545
Ssu4g0529 242 ProSitePatterns Pectinesterase signature 2. 67 76 IPR033131 -
Ssu4g0529 242 PANTHER PECTINESTERASE 4 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0529 Ssu-Chr4 8347687 8348415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0529 8 239 Carbohydrate Esterase AT2G47030 50.215 2.15e-77 242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0529 4 8347687 8348415 Ssu7g1898 7 38066649 38069794 PCT