LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu4g0524	AtgttctcttttctccttttgttttcTGCGATGGAGGACGAGCCGTTTCTCGGCAACACTTCCCACCCCATCGAGCGCGCCGATTTCCCCCTGCCATCTTCCAAGTCCTTCAACGACGTCGCCACCCCCCCACGCGCGGAGATAGAATCCTCCACCGAACACCAACCGTTTCaccccaagaaaaaaaaactgagtcGTTGCAAGACAGCACCGGCCATGGTCGCCATGCGAGACCCCGAACCCAAGACACCCCAAGTCCCCAAACCTCAATTTAGTTCCATAATCCGACAAGGCATTTGGTTACTCGCCGTGTACCTCTCCGTCGGAGTGGCCATATACTCTTTCAACAGGGACCGTTTTTCGGGCATGGAAACGCACCCTGTGGTCGATGCCCTTTACTTTTGTATAGTCACCATGTGCACCATAGGTTACGGGGACATAGCTCCGTTAACCCCACTTACCAAGGTTTTCGCTTGTGTTTTTGTGTTGGTGGGGTTTGGGTTCATAGACATACTCCTTAGTGGGCTTGTTAACTTTGTTTTGGATTTGCAAGAGAACATGATCCTAGCAGGGCTTCAAATGGGTGCGAGGGAAGGCTTCTCCGCCAGGAATTACATCGTGGATGTGGCGAAGGGGAGGATGAGGATCAGGCTGAAGGTCGGGTTGGCGCTTGGGGTTGTGGTCTTGTGTATTGGGATTGGGAGTTTGGTGTTGTACTTTGTGGAggggttggattgggttgatTCTGTTTACTTGTCGGTTATGTCTGTCACAACGGTTGGGTATGGGGACAGAGCCTTTAAGACACTTCCTGGTCGCTTATTTGCGGCTATTTGGTTGCTCTTCTCTACTTTGATGGTGGCCCGGGCTTTCCTCTATTTGACAGAGGCCAGAATCGATAGAAGGCATCGGAGAATGGCTAAGAAAGTGTTGCATAGGGACATAACCGTTGAGGATTTGCTTGCTGCTGATATCAACAACACTGGTTTCATCAGTAAGTCAGAGTATGTGATCTTCAAGCTCAAAGAAATGGGTAAAATACAGGATAAAGATGTGTTGCAAATTTGTGACCAATTCAGGAAGCTTGACCCCTCTAACTGTGGGAAGATAACACTACCTCATATCTTGGAGGGAAGATCATGA	1143	0.4681	MFSFLLLFSAMEDEPFLGNTSHPIERADFPLPSSKSFNDVATPPRAEIESSTEHQPFHPKKKKLSRCKTAPAMVAMRDPEPKTPQVPKPQFSSIIRQGIWLLAVYLSVGVAIYSFNRDRFSGMETHPVVDALYFCIVTMCTIGYGDIAPLTPLTKVFACVFVLVGFGFIDILLSGLVNFVLDLQENMILAGLQMGAREGFSARNYIVDVAKGRMRIRLKVGLALGVVVLCIGIGSLVLYFVEGLDWVDSVYLSVMSVTTVGYGDRAFKTLPGRLFAAIWLLFSTLMVARAFLYLTEARIDRRHRRMAKKVLHRDITVEDLLAADINNTGFISKSEYVIFKLKEMGKIQDKDVLQICDQFRKLDPSNCGKITLPHILEGRS	380

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu4g0524	380	PANTHER	TWO-PORE POTASSIUM CHANNEL 4-RELATED	46	375	-	-
	Ssu4g0524	380	MobiDBLite	consensus disorder prediction	41	64	-	-
	Ssu4g0524	380	Gene3D	-	86	191	-	-
	Ssu4g0524	380	Gene3D	-	203	322	-	-
	Ssu4g0524	380	PRINTS	Two pore domain K+ channel signature	258	267	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Ssu4g0524	380	PRINTS	Two pore domain K+ channel signature	137	165	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Ssu4g0524	380	SUPERFAMILY	Voltage-gated potassium channels	92	180	-	-
	Ssu4g0524	380	Pfam	Ion channel	101	180	IPR013099	-
	Ssu4g0524	380	Pfam	Ion channel	228	295	IPR013099	-
	Ssu4g0524	380	ProSitePatterns	EF-hand calcium-binding domain.	324	336	IPR018247	-
	Ssu4g0524	380	PANTHER	POTASSIUM CHANNEL, SUBFAMILY K	46	375	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Ssu4g0524	380	SUPERFAMILY	EF-hand	321	373	IPR011992	-
	Ssu4g0524	380	SUPERFAMILY	Voltage-gated potassium channels	211	319	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu4g0524	Ssu-Chr4	8304680	8307095	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu4g0524	17	376	Ion Channels	AT4G01840	63.243	1.29e-158	450

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu4g0524	K05389		-	gmx:100780438	628.632