Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0523 ATGGCAATGTCTGTGATAAGAAGAAAACAAGGCCTAGTTAAACCAGCCGAGGAGACTCCCTTGACCACACTAGACCTATCAGTGATCGATCGATTAACTGTTCTAAGATGCAATGCAAGAACCTTACACGTGTTCAAACACGGTCCTGAAGCGGCAAGGGTCATAAGAGAGGCCTTGTCCAAAGCACTTGTTCCCTATTACCCTCTTGCAGGACGACTCACGGAATCCCAACCAGGGTGCCTCCAGATTGAATGCTCAGGCGACGGCGTGTGGTACGTCGAGGCATCTTCGGATTGCACCCTTCACTCTCTCAATTTCTTTGACGATGTTCAGTCTATTCCATATGATGATCTTCTTCCTGATGCTATTCCCGAGAGCCAACGCATCGACCCCCTCGTGCAAATGCAGGTGACACAATTTGGTTGCGGTGGTTTTGTGATAGGCCTCATATTCTGCCATAGCATATGTGATGGTCTTGGTGCTGCACAGTTTCTGAATGCAATCGGGGAACTAGCTCGGGGTCTCGAGAAACCCAGCATTGAACCCGTGTGGCACAGGGAGTTCTTTCCATCTCCTCAAACGCCCCAAGAAACTGCATTCCCACCAATACTACCCCCTCCTCCTCAAATGCCAGACTATAAGCTAGAGCATGCTAACATAGACATGCCCATGGATCCAATCAATCGCGTGAAGAGAGAATTTCAACAAGTGACTGGACTCACTTGCTCAGCCTTCGAGATTGTAGCGGCAGCATGTTGGAGCACCCGAACAAGGGCCATTCAATTCGAGCCCAACACTCAACTTAAGCTTGTGTTCTTTGCGAATTGCCGCCATCTCTTGGACCCTGCTCTGCCCAGTGGTTTCTACGGCAACTGTTTCTTCCCAGTGACGATCACTGCTTCGTGTGGGTTGCTTAAACAGGCAACGACGGTTAGTGTGGTGAAGCTGATACAAGAAGCGAAGGCCAAGTTACCCGTGGAATTTGGCAAGTACTTGGAGGGTGAGCGTTTGAAAAACGGAGAGGACCCGTTTGCGCCCCCACTCACCTACACCACTCTGTTTATCTCTGAGTGGGGGAGGCTGGGATTCAACCACGTGGACTACCGGTGGGGCCCACCCGTCCACGTGGTTCCCGTTCAAGGATCCAGCATCATACCAGTGGCCATTGTGGGGTCGCTGCCTCTTCCGAACAGAGGGATTCGTTTGATGACGTGGTGCGTGGAGGAGGCACATCGCCTTCCTTTCCTTCGTCACATGCATGGTGTCATGAATCAGGAATTGGTCATGTAA 1290 0.5109 MAMSVIRRKQGLVKPAEETPLTTLDLSVIDRLTVLRCNARTLHVFKHGPEAARVIREALSKALVPYYPLAGRLTESQPGCLQIECSGDGVWYVEASSDCTLHSLNFFDDVQSIPYDDLLPDAIPESQRIDPLVQMQVTQFGCGGFVIGLIFCHSICDGLGAAQFLNAIGELARGLEKPSIEPVWHREFFPSPQTPQETAFPPILPPPPQMPDYKLEHANIDMPMDPINRVKREFQQVTGLTCSAFEIVAAACWSTRTRAIQFEPNTQLKLVFFANCRHLLDPALPSGFYGNCFFPVTITASCGLLKQATTVSVVKLIQEAKAKLPVEFGKYLEGERLKNGEDPFAPPLTYTTLFISEWGRLGFNHVDYRWGPPVHVVPVQGSSIIPVAIVGSLPLPNRGIRLMTWCVEEAHRLPFLRHMHGVMNQELVM 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0523 429 Gene3D - 1 201 IPR023213 -
Ssu4g0523 429 PANTHER ACYL TRANSFERASE 4 1 421 - -
Ssu4g0523 429 PANTHER ACYL TRANSFERASE 4 1 421 - -
Ssu4g0523 429 Pfam Transferase family 5 380 - -
Ssu4g0523 429 Gene3D - 202 411 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0523 Ssu-Chr4 8287882 8290179 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0523 3 385 Monolignol Biosynthesis Gene Families AT5G48930 28.132 9.84e-38 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0523 - - gmx:100783128 749.969