Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0522 ATGTCTGATATGATGAGGCATGAGAATGGCTTGCATGGTGGGGAGCTTAAACATGATGAGAAAACAGCACCAGAGAGCAGCACAAATggggaaaagaaaggaaagagcaaacaaaaagaaaaggctgAAACGGTTCCATATCACAGGCTTTTCTCATTTGCAGACTCCACTGACATCATTTTGATGGTTGTTGGCACCACTGGGGCCATTGGAAATGGTCTTGGGATGCCTCTCATGACACTGCTGTTCGGGGAACTGATTGATAGCTTTGGCAATAACCAATTTAGCCCCGACGTTATCAAACAAGTTTCCAAGGTCTGTCTGAAATTTGTGTACTTAGGAATAGGCACTGGTGTGGCTGCTTTTCTCCagGTGACTTGCTGGATGGTCACAGGGGAAAGACAGGCTGCAAGAATAAGGGGCTTGTATTTGAAAACTATACTAAGACAGGATATTGCTTTCTTTGACAAGGAAACTAACACAGGAGAGGTGATAGGGCGGATGTCAGGTGACACTATTCTCATACAAGATGCCATGGGTGAGAAgGTTGGGAGATTTCTGCAGCTAATAGCAACTTTCTTTGGGGGCTTTGTTATAGCATTTATCAAAGGGTGGCTTCTTACTGTTGTCATGTTATCCGCTGTTCCACTTGTTGCTGCTGCTGGTGCTGCTTTTGGCTTTATCATAGGAAGGATGGCAACCCGAGGTCAAAGCGCGTATGCAAAAGCTTCGCGTGTGGTTGAAGAGACAATAGGTTCAATAAGAACTGTTGCATCCTTTACGGGGGAAAAGCATGCAGTATCTAGTTACAAGAAATTTCTTGCAGATGCTTACAAAGCAGGAGTTCATGAAGGTTTTGTAGGTGGAGTGGGTCTTGGCATAGTTATGTTAGTTATTTTCTGTGGTTACGCTTTGGCTGTATGGTTTGGCGCAAAGATGATAATGGAAAAAGGATATGGTGCGGGTGCGGTGGTCAATGTGTTTGTTGCTGTGTTAAATGCTTCCATGTCTCTTGGCCAGGCATCTCCTCCCCTTAGTGCTTTTGCTGCAGGTCAAGCAGCAGCTTATAAAATGTTTCAGACGATTAAGAGAAAGCCAGAGATAGATGCTTATGATCCAAATGGAAAAAAACTAGAGGATATTCATGGTGAAATCCATTTAAGGGATGTTTATTTCAGTTATCCAGCTAGACCTGAGGAGTTGATATTCAATGGATTCTCTCTTCATATACCTAGTGGCACCACTGCAGCTTTAGTAGGACAAAGTGGAAGTGGGAAGTCTACAGTTATCAGTTTAATAGAAAGATTTTATGATCCACAGGCAGGTGAAGTTCTTATTGATGGCAATAATGTGAAAGAATTTCAGCTTAGATGGATCAGAGGAAAAATTGGCCTTGTCAGTCAGGAGCCAGTGTTGTTTGCATCTAGCATTAAGGATAATATTGCATATGGAAAAGACGGAGCAACAGTTGAAGAGATAAGAGCTGCAGCAGAACTTGCAAATGCTACTAAATTCATTGACAAACTGCCACAGGGATTGGACACAATGGTTGGTGAGCATGGAACTCAACTATCCGGTGGACAGAAGCAGCGCATTGCCATTGCAAGAGCAATCCTTAAAGATCCAAGAATTCTACTTCTAGATGAAGCAACAAGTGCACTTGACGCAGAGTCTGAAAGAATAGTGCAAGAAGCTCTAGACAGGATCATGGTCAACAGAACTACTGTCATTGTCGCACATCGCCTGAGCACAGTGAGAAATGCTGATATGATCGCTGTAATTCATAGAGGGAAAATGGTTGAGAAAGGAACACACTTAGAATTAACCAAGGATCCTGAGGGAGCTTACTCTCAACTTATACGTTTACAAGAAGGAAACAAGGTATCAGAAGAAACAAGAGACAATCAAAACAAGAGGGAACTTTCCTCAGAATCCTTTAGAAATTTGAGTCAAAGGAGGTCACTTGGAAGATCAGGATCATCTGTGGGGAGCAGTAGCCGCCACTCTTTTTCAGTTTCATTTGGTTTACCTACAGGAGTTAACATTCATGATCCTGATCTTGAAAACTCAGAGTCACAGCCTAACGAAAAATCACCAGAAGTTCCACTCCGGCATCTTGCTTCCCTCAACAAGCCAGAGATTCCAGTGCTTCTGATTGGATGTGTAGCTGCCATAGCAAATGGTACCATATTTCCAATATTTGGTGTGCTGCTCTCCAGTgttatcaaaacattttttaaaccaTTTCCTGAGATGAAAAAGGATTCCAAGTTTTGGGCACTCATGTTTGTGACCCTTGGATTTGGGTCTTTACTGGCAATTCCAGGCCGAAGTTATTTTTTCTCTGTGGCTGGCAGTAAGTTAATCCGACGGATCAGGCTCATTTGTTTTGAGAAGGTGATCAACATGGAAGTTGGTTGGTTTGATGAGCCTGAGCACTCTAGTGGTGCAATTGGTGCAAGGCTCTCAGCAGATGCTGCATCTGTGCGTGCCCTTGTTGGTGATGCTCTAGGACTATTGGTTCAAAATATAGCAACAGCATTGACCGGTTTGATTATTGCTTTCGTTGCAAGCTGGCAGTTGGCGTTTATTCTTCTTGCCTTAGTTCCCCTCATTGGAATGAATGGTTATATTCAAATGAAATTCATGAAGGGATCCAGTGCAGATGCAAAGATGATGTATGAGGAAGCAAGCCAGGTTGCTAATGATGCAGTTGGAAGCATAAGAACAGTAGCTTCTTTCTGTGCTGAGGAGAAAGTTATGGAACTATACAGGAAGAAATGTGAAGGTCCCATGAAAGCAGGGATACGACAAGGCTTGATAAGTGGAACAGGATTTGGGGTTTCATTTTTCTTACTCTTCAGTGTCTATGCAACCAATTTCTATGCTGGAGCCAGATTTGTGGAAGCTGGCAAGGCATCATTCTCAGATGTTTTTCGGGTTTTCTTTGCTTTAACTATGGCATCTATTGGAATTTCCCAATCAAGCTCACTTGCTCCTGATTCTAAGAAAGCCAAGATAGCCACTGTTTccatatttaacataattgataGGAAATCGAAGATAGATCCAAGTGATGAGTCTGGTAGCACACTGGATAGTGTAAAGGGAGAAATAGAGCTTCGTCATGTAAGCTTTAAGTATCCATCTAGACCAGATATTCAAATTTTTCGAGACCTTAGCTTGACTATCCATTCAGGCAAGACTGTGGCCCTTGTTGGTGAAAGTGGGAGTGGGAAATCCACAGTGATTGCCTTGTTACAGAGATTTTATGATCCTGATTCTGGTCAAATTACACTTGATGGGATAGAAATTCAGAATTTACAACTCAAGTGGTTAAGGCAGCAGATGGGACTGGTAAGCCAAGAGCCAGTCTTGTTCAATGACACCATCCGGCCAATATAG 3405 0.4176 MSDMMRHENGLHGGELKHDEKTAPESSTNGEKKGKSKQKEKAETVPYHRLFSFADSTDIILMVVGTTGAIGNGLGMPLMTLLFGELIDSFGNNQFSPDVIKQVSKVCLKFVYLGIGTGVAAFLQVTCWMVTGERQAARIRGLYLKTILRQDIAFFDKETNTGEVIGRMSGDTILIQDAMGEKVGRFLQLIATFFGGFVIAFIKGWLLTVVMLSAVPLVAAAGAAFGFIIGRMATRGQSAYAKASRVVEETIGSIRTVASFTGEKHAVSSYKKFLADAYKAGVHEGFVGGVGLGIVMLVIFCGYALAVWFGAKMIMEKGYGAGAVVNVFVAVLNASMSLGQASPPLSAFAAGQAAAYKMFQTIKRKPEIDAYDPNGKKLEDIHGEIHLRDVYFSYPARPEELIFNGFSLHIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGNNVKEFQLRWIRGKIGLVSQEPVLFASSIKDNIAYGKDGATVEEIRAAAELANATKFIDKLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKMVEKGTHLELTKDPEGAYSQLIRLQEGNKVSEETRDNQNKRELSSESFRNLSQRRSLGRSGSSVGSSSRHSFSVSFGLPTGVNIHDPDLENSESQPNEKSPEVPLRHLASLNKPEIPVLLIGCVAAIANGTIFPIFGVLLSSVIKTFFKPFPEMKKDSKFWALMFVTLGFGSLLAIPGRSYFFSVAGSKLIRRIRLICFEKVINMEVGWFDEPEHSSGAIGARLSADAASVRALVGDALGLLVQNIATALTGLIIAFVASWQLAFILLALVPLIGMNGYIQMKFMKGSSADAKMMYEEASQVANDAVGSIRTVASFCAEEKVMELYRKKCEGPMKAGIRQGLISGTGFGVSFFLLFSVYATNFYAGARFVEAGKASFSDVFRVFFALTMASIGISQSSSLAPDSKKAKIATVSIFNIIDRKSKIDPSDESGSTLDSVKGEIELRHVSFKYPSRPDIQIFRDLSLTIHSGKTVALVGESGSGKSTVIALLQRFYDPDSGQITLDGIEIQNLQLKWLRQQMGLVSQEPVLFNDTIRPI 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0522 1134 MobiDBLite consensus disorder prediction 622 667 - -
Ssu4g0522 1134 MobiDBLite consensus disorder prediction 642 667 - -
Ssu4g0522 1134 Gene3D ABC transporter type 1, transmembrane domain 49 640 IPR036640 GO:0005524|GO:0016021
Ssu4g0522 1134 ProSitePatterns ABC transporters family signature. 524 538 IPR017871 GO:0005524
Ssu4g0522 1134 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1030 1132 IPR027417 -
Ssu4g0522 1134 CDD ABC_MTABC3_MDL1_MDL2 385 623 - -
Ssu4g0522 1134 SMART AAA_5 412 604 IPR003593 -
Ssu4g0522 1134 CDD ABC_6TM_Pgp_ABCB1_D1_like 62 346 - -
Ssu4g0522 1134 Pfam ABC transporter 1058 1130 IPR003439 GO:0005524
Ssu4g0522 1134 Gene3D ABC transporter type 1, transmembrane domain 1007 1028 IPR036640 GO:0005524|GO:0016021
Ssu4g0522 1134 Gene3D ABC transporter type 1, transmembrane domain 697 1006 IPR036640 GO:0005524|GO:0016021
Ssu4g0522 1134 MobiDBLite consensus disorder prediction 626 641 - -
Ssu4g0522 1134 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 63 350 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu4g0522 1134 Gene3D - 1029 1132 IPR027417 -
Ssu4g0522 1134 Gene3D - 375 624 IPR027417 -
Ssu4g0522 1134 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 718 1004 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu4g0522 1134 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 23 1132 - -
Ssu4g0522 1134 MobiDBLite consensus disorder prediction 1 41 - -
Ssu4g0522 1134 SUPERFAMILY ABC transporter transmembrane region 43 369 IPR036640 GO:0005524|GO:0016021
Ssu4g0522 1134 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 385 621 IPR003439 GO:0005524
Ssu4g0522 1134 Pfam ABC transporter transmembrane region 717 988 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu4g0522 1134 Pfam ABC transporter transmembrane region 63 336 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu4g0522 1134 PANTHER - 23 1132 - -
Ssu4g0522 1134 Pfam ABC transporter 404 552 IPR003439 GO:0005524
Ssu4g0522 1134 SUPERFAMILY ABC transporter transmembrane region 699 1023 IPR036640 GO:0005524|GO:0016021
Ssu4g0522 1134 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 374 623 IPR027417 -
Ssu4g0522 1134 CDD ABC_6TM_Pgp_ABCB1_D2_like 707 1022 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0522 Ssu-Chr4 8273290 8278198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0522 63 623 Calmodulin-binding Proteins AT2G36910 38.704 6.48e-115 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0522 K05658 - gmx:100802547 1953.33