Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0515 ATGGAGAACCGACACCACCGTGAATTAACCTTCTTAAGCTCCGGCGACTTCCTCGGCCACCGTATAGATCGCACAACCCACAACCGCAACCCAGATCCTCCCATCAAAGAAATGGATTTCTTTTCATCAGCTTCATCTGCaggtaataataaaagtaatgatATCAACGATGATAATCAGAAGCAGCAGCAGAAACGTGACGGGGATCAAGATGACACTCATCGCCGTGGAAGCATCACCAAAGATGGATCACCAACACACGTCACTGATCAGCCTGTAAACACCGGGCTGAATTTAAGGTGTGCGAGTGCCGGAGtgacaaaagcaaaaaatggtgaaatttcTGAAACTGAGCTGAGTTCTCTTGAAAGTCAATTGCGGAGACTACGAGAAGAGAATAGCAAGTTGAGAACTGTGTTGGACCAGATCACCAAAAGTTATACCCAACTACAAGCTCAGCTGTTCATCGCTCTGCAAAACCAAAAGCTTCCCCAGAATACGGAATCACAGGGGATGGTGTCGGGACAAAAATTTGTGGACCCACGACCATGCAGGAAGTTAGACGTCAATGATGCATCGGTTTCTGATGATAAGACCGATCGCGAGGTATCGGTTTCTCGTTCAAACAACGCGGAGGTAATGTCGAAGACACATGATGACCCTCAATTGACTAAACTGAATCTTGGAAAGCACGTTTGTCCTGATGCAGCAGAAGATGTTCTTGACCGCTCCTCCTCACAGAGCTGGGGCTCACCCAAGTTAGAAGAAGAACCCAAAACTGCCGAACAAGTTCCTGCTGATCAGATTCCCTTCAGAAAAGCCAGGGTTTCCGTACGTGCTAGATCAGAAGCTCCCCTGATCAGTGATGGATGTCAGTGGAGgaaatatggacaaaaaatGGCCAAGGGTAACCCTTGCCCTCGTGCTTACTATCGCTGCACTATGTCTGTAGGATGTCCAGTCCGCAAACAgGTGCAAAGATGCGCAGAAGACAAGACAGTGTTGATAACAACATACGAAGGCAATCATAACCACCCTCTGCCACCGGCCGCCTCTGCCATGGCAAACACCACGTCAGCGGCCGCGGCCATGCTGCTATCAGGTTCAACAGCGAGCAAGGAAGCGCAAGCAGCGTATTACTCTTCAATTCCCTATGCTTCAATGGCAACCCTGTCAGCTTCAGCTCCATTCCCAACCATCACCCTAGACTTGACCCAAAACCCCAATGCCATGCAGCTGAACCGAGTACCGGGTCATGGCCCTACGTTCCCTCTGCCACTGCATGCATCCGGTGGTCCTCACCTACTAGGGCACCCCATGTTCTTCTCACAGAAGCTTCCGCCTGCGGCATTGCCACTACTTCAACGACAACCTCCGACTATGGTCGAAACGGTGAGCGCAGCCATTGCTTCGGATCCAAATTTCACCGCAGTTTTGGCCGCAGCAATCTCGTCAATCATTGGGGTACCAAGAGGCAGTGacggtaataataataatggaagtGCTGCTATTCCCGGGTCACCGCAGCTTCCTCAGTCATGCACTACTTTCTCCACCAACTAG 1563 0.4818 MENRHHRELTFLSSGDFLGHRIDRTTHNRNPDPPIKEMDFFSSASSAGNNKSNDINDDNQKQQQKRDGDQDDTHRRGSITKDGSPTHVTDQPVNTGLNLRCASAGVTKAKNGEISETELSSLESQLRRLREENSKLRTVLDQITKSYTQLQAQLFIALQNQKLPQNTESQGMVSGQKFVDPRPCRKLDVNDASVSDDKTDREVSVSRSNNAEVMSKTHDDPQLTKLNLGKHVCPDAAEDVLDRSSSQSWGSPKLEEEPKTAEQVPADQIPFRKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMSVGCPVRKQVQRCAEDKTVLITTYEGNHNHPLPPAASAMANTTSAAAAMLLSGSTASKEAQAAYYSSIPYASMATLSASAPFPTITLDLTQNPNAMQLNRVPGHGPTFPLPLHASGGPHLLGHPMFFSQKLPPAALPLLQRQPPTMVETVSAAIASDPNFTAVLAAAISSIIGVPRGSDGNNNNGSAAIPGSPQLPQSCTTFSTN 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0515 520 Coils Coil 112 146 - -
Ssu4g0515 520 MobiDBLite consensus disorder prediction 22 96 - -
Ssu4g0515 520 MobiDBLite consensus disorder prediction 42 57 - -
Ssu4g0515 520 Pfam WRKY DNA -binding domain 289 346 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu4g0515 520 MobiDBLite consensus disorder prediction 240 263 - -
Ssu4g0515 520 SMART WRKY_cls 287 347 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu4g0515 520 MobiDBLite consensus disorder prediction 497 520 - -
Ssu4g0515 520 MobiDBLite consensus disorder prediction 58 81 - -
Ssu4g0515 520 MobiDBLite consensus disorder prediction 206 222 - -
Ssu4g0515 520 Gene3D WRKY domain 272 349 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu4g0515 520 ProSiteProfiles WRKY domain profile. 282 348 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu4g0515 520 PANTHER WRKY TRANSCRIPTION FACTOR 47-RELATED 30 520 - -
Ssu4g0515 520 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 30 520 IPR044810 GO:0003700
Ssu4g0515 520 MobiDBLite consensus disorder prediction 181 205 - -
Ssu4g0515 520 MobiDBLite consensus disorder prediction 166 222 - -
Ssu4g0515 520 SUPERFAMILY WRKY DNA-binding domain 280 348 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu4g0515 520 MobiDBLite consensus disorder prediction 82 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0515 Ssu-Chr4 8195269 8199091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0515 7 520 WRKY Transcription Factor Family AT4G01720 41.591 1.03e-89 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu4g0515 WRKY 4.6e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0515 - - gmx:100783661 678.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0515 4 8195269 8199091 Ssu7g1885 7 37798845 37803815 PCT