Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0513 ATGGGCAAAGCCGCTagttcttcctcctcctctatTAGCAGCAGCAGCAACCAGCACCTCCTCATTTCAACCGCGTCCTCTCTCACACACCTCAACACGCAAGAACTTCCCACTGATCTTAGGCTTGGACTCGGCATTTCCGCCACTCAACATGTTGGCTCTTCTATTTCAAGGGGCCAGTGGCAACCAAACCACCCACTTGTGAGCACTTCACAAGCTGCTGAAGTCAATGATTGCAACGATCATAGCAGCTTCTTTGTGAAGGTCTACATGGAAGGCATTCCAATCGGAAGAAAACTCAATATACTAGCTCATGGAGGCTACTATGAGTTAGTGAAGACTCTTGAACACATGTTCGACACCACCATTCTTTGGGGGACAGAGATGAATGGAGTGCAACCCGAGAGATGCCATGTGCTAACTTATGAAGATGAAGAAGGGGATTTGGTCATGGTTGGAGATGTCCCTTGGGAGATGTTCTTATCGACTGTAAAGAGGTTGAAGATCACAAGGGTAGACACATTCGGGTGTTAA 534 0.4588 MGKAASSSSSSISSSSNQHLLISTASSLTHLNTQELPTDLRLGLGISATQHVGSSISRGQWQPNHPLVSTSQAAEVNDCNDHSSFFVKVYMEGIPIGRKLNILAHGGYYELVKTLEHMFDTTILWGTEMNGVQPERCHVLTYEDEEGDLVMVGDVPWEMFLSTVKRLKITRVDTFGC 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0513 177 ProSiteProfiles PB1 domain profile. 84 174 IPR000270 GO:0005515
Ssu4g0513 177 Gene3D - 78 176 - -
Ssu4g0513 177 PANTHER AUXIN-INDUCED PROTEIN 2 176 - -
Ssu4g0513 177 SUPERFAMILY CAD & PB1 domains 79 169 - -
Ssu4g0513 177 Pfam AUX/IAA family 73 171 IPR033389 -
Ssu4g0513 177 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 176 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0513 Ssu-Chr4 8168209 8169214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0513 88 169 B3 DNA Binding Superfamily AT4G23980 39.024 2.08e-12 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Ssu4g0513 AUX_IAA 7.4e-28 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0513 K14484 - gmx:100818376 293.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0513 4 8168209 8169214 Ssu7g1883 7 37741731 37742740 PCT