Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0512 ATGATTCAGAAGATGCTTGACACCACCCGCTCGGGGATCACAAGAAGCTCCTCCCATGTGGCCTCCATTTATGACAATGATTTCCTTGAGCTGGTATGGGAAAATGGTGAAGTTGTTGTGCGAGGAGGTTCATCAAATAGGAGGCGAAACACTTCACGCAATAACGAGGAAAGAACACATGAATATGGCAGCATTACAAAAAGAACAAGGCTAAACCCACTATACTCACTTGAAGATTATCACTTCCCCGCTCAAAGGGACTTTGACATGAGCTCTTCACATCAAAGCAATGGCCAAGATTCTTGTCAATCATCCCAAAGCAAGAATTCCTGCAAGCTTAATGAAGAATTTGCAAACTTGCTAAGAGCAGTAAAAGACTCCAAGCCCGTTACAACAGGCAATAGTCACTTACAACAGTGTTTACCTCCATCTCCGCTCAAGAAACAAAGAACAGATTCAACCCAAACACCAGCAGCAACAAACACGCGGAACTTGGGATGTGATCAAAGAACAGCAAAAGTGAACTTCTCCAACTTTTCCATACCTGCAGTGTTTCTCAAATCTACTACTTGTCAGGGAAACAGTGCAACTCAGCAGGCAAAAAATAATGCATCTCAAGCAAGAGTGGATGAGATTGAAGCGGGCAAGGTTGGGAAATCAGCTAAAGAATCACACGGATTTCAAAAGCAAACGTCTTTAATTGTTGAAAGAAGCGCAAAACCACCCCCACCCGTTGATGAGCATTCTGAAGCTATTGGTCATAACAGTGGTGCTCTTGGAATTCACAGATGTCAAGGTCAACGTTGTGACCAAACCTCAAGCTCAGAAGCACTTAGAGCCGGGGCAAAAGCTAATACTAACGTGTGTCATGAACCGTTGCTAGCATCTTCTTCTGTGTGCTCGCTTGGAGCCTCGAACGACCCAAACCTTGGTATGAGGAAACATGAGGACACTGATGACTCAACATATTTAAGTGATAATGATGGAGATCCGGAAGATAGGGAGGGTAACAGAGTCAAGAGAAGCAGGAACGCGGAGGTCCATAACTTATCTGAAAAGAAGCGAAGGGAAAAAATCAACAAGAAGATGCGTACATTGAAAGAGCTCATACCCAATTGCAATAagGTGGACAAAGCGTCAATGCTTGACGATGCCATTGACTATCTTAAGACTCTAAAGCTtcaattacagATTATGTCAATGGGTAGTGGGTTATGGCCACTTATGATGGTACCTGCTGCTGGAATGGGATTCAGGCCACCACAGCTCCCGATTCCACCACTTTCTGCTATCACAGACAACAGACTTCAGATGTTTGGTTTCCCCAACCAAGTACCACCCATGCCAATGCCTCATGCACCTTTCTTCCCTATCATTGGAAATTCTGCCACACAACCACACTTGGCTAACACCACAGCTACCACTAACCTGGCGGAACATATGGCTCATCCTGTGACTCTACAGGCCTCAGTCCCCAATAACTTAGATCCTCGTGAAAATGCAACAAAGCAAGTGCCGAATCAGGTTTCCTTTCAACACCACAGCACTAGTACTCCACTACCACTAGCTACCCCTTTCATTTTTCCACaaaatagagggaaaaaaaaaggaaaatgtacATGA 1623 0.4362 MIQKMLDTTRSGITRSSSHVASIYDNDFLELVWENGEVVVRGGSSNRRRNTSRNNEERTHEYGSITKRTRLNPLYSLEDYHFPAQRDFDMSSSHQSNGQDSCQSSQSKNSCKLNEEFANLLRAVKDSKPVTTGNSHLQQCLPPSPLKKQRTDSTQTPAATNTRNLGCDQRTAKVNFSNFSIPAVFLKSTTCQGNSATQQAKNNASQARVDEIEAGKVGKSAKESHGFQKQTSLIVERSAKPPPPVDEHSEAIGHNSGALGIHRCQGQRCDQTSSSEALRAGAKANTNVCHEPLLASSSVCSLGASNDPNLGMRKHEDTDDSTYLSDNDGDPEDREGNRVKRSRNAEVHNLSEKKRREKINKKMRTLKELIPNCNKVDKASMLDDAIDYLKTLKLQLQIMSMGSGLWPLMMVPAAGMGFRPPQLPIPPLSAITDNRLQMFGFPNQVPPMPMPHAPFFPIIGNSATQPHLANTTATTNLAEHMAHPVTLQASVPNNLDPRENATKQVPNQVSFQHHSTSTPLPLATPFIFPQNRGKKKGKCT 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0512 540 MobiDBLite consensus disorder prediction 310 356 - -
Ssu4g0512 540 MobiDBLite consensus disorder prediction 306 357 - -
Ssu4g0512 540 MobiDBLite consensus disorder prediction 50 65 - -
Ssu4g0512 540 MobiDBLite consensus disorder prediction 215 252 - -
Ssu4g0512 540 MobiDBLite consensus disorder prediction 87 107 - -
Ssu4g0512 540 CDD bHLH_AtPIF_like 343 405 - -
Ssu4g0512 540 MobiDBLite consensus disorder prediction 128 164 - -
Ssu4g0512 540 Gene3D - 339 400 IPR036638 GO:0046983
Ssu4g0512 540 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 341 408 IPR036638 GO:0046983
Ssu4g0512 540 MobiDBLite consensus disorder prediction 88 107 - -
Ssu4g0512 540 MobiDBLite consensus disorder prediction 42 67 - -
Ssu4g0512 540 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 343 392 IPR011598 GO:0046983
Ssu4g0512 540 MobiDBLite consensus disorder prediction 512 540 - -
Ssu4g0512 540 PANTHER TRANSCRIPTION FACTOR PIF3 1 527 IPR044273 GO:0003700|GO:0006355
Ssu4g0512 540 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 527 - -
Ssu4g0512 540 Pfam Helix-loop-helix DNA-binding domain 347 392 IPR011598 GO:0046983
Ssu4g0512 540 SMART finulus 349 398 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0512 Ssu-Chr4 8144820 8147039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0512 141 420 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 37.500 1.26e-31 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu4g0512 HLH 5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0512 K12126 - gmx:100784724 682.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0512 4 8144820 8147039 Ssu4g0512 4 8144820 8147039 ECH
Ssu4g0512 4 8144820 8147039 Ssu7g1880 7 37698260 37700334 PCT