Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0510 atggGAAGGCACTCTTGCTGTTACAAGCAGAAACTTAGGAAGGGTCTGTGGTCACCAGAGGAGGATGAAAAACTTCTGAGGCATATTACTACGTACGGTCATGGATGTTGGAGCTCGGTTCCTAAGCAAGCAGGTTTGCAGAGGTGTGGCAAGAGCTGCAGGCTTAGGTGGATCAATTACTTAAGGCCTGATTTGAAGAGAGGTACATTTtcacaagaagaagaaaatctcATCATTGAACTTCATGCAGTGCTAGGGAACAGaTGGTCTCAAATTGCAGCACAATTGCCCGGGAGGActgacaatgaaataaaaaatctgTGGAATTCTTGCCTAAAGAAGAAACTGAGGCAAAGAGGTATAGACCCTGTGACACATAAGCCACTGTCAGAGGTTGAGAATGGGGAGGAGGACAAAACAAGGAGCCAAGAATTATCCAATGAATTGAACCTTCTGAATTCAGAGAGCTTCAAGTCAGATGAAGGGTCCTATGAGCAGAGAGCATCTTCAATTGCCCCCAAAGCCTATGAGATGGAAGGTTCTTGCAGCTCCAAGATTAACACCAACAACGACACCAACTTGATTGTCAATTGTTCCAACAAAGACTTGTTCCTAGACAGCTACACCACTAGTTGCCAACCCTCAGATTTGATGGGAAATTACCCTCTTCAGATCACTGACACTCTTACAACCAATTCAAACTCTTGCCATTGGTTCAACCCAACTGCAAGGCCCTTTGGCATGAACTCTGAGTTCACTTCCAATGTTATGTCCATTCTTCCACCCACAACTACCTCATTTCTCCCTACTTCTTTTTGCTACAAGCCATCACTTGCTGTCCCTTCAGAAGATATTTCAACAGCCTCTTTTGCTTTGAATGGACCCAATTATTGGGAGGCCAGTGCCTCCAACAACAGCAATGGAAGCAACACAAGTGATGGCAGCAGAGAGTTGACAAGTGGCAAGAACAGTGTCCTCTCTTCTTGGGGATTGACGGAAGAAGCCAAGTGGTCTGAGTACCTCCACAACCCAATGTTAATGCTGGCAGCAGCTCCTGAATCATTGTGCTACCAATTAAGGCCAGCCACCCATTCGGTACCTGATAATAATACTTTAGGGGCAATATTGCCTGATTCCAAGGAGCAACAACAGTCCCAAACTTCTAGCATCTTCTCCAAGGACATCCAGAAGCTAACAGCAGCCTTTGGACATATATAG 1218 0.4384 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITTYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLSEVENGEEDKTRSQELSNELNLLNSESFKSDEGSYEQRASSIAPKAYEMEGSCSSKINTNNDTNLIVNCSNKDLFLDSYTTSCQPSDLMGNYPLQITDTLTTNSNSCHWFNPTARPFGMNSEFTSNVMSILPPTTTSFLPTSFCYKPSLAVPSEDISTASFALNGPNYWEASASNNSNGSNTSDGSRELTSGKNSVLSSWGLTEEAKWSEYLHNPMLMLAAAPESLCYQLRPATHSVPDNNTLGAILPDSKEQQQSQTSSIFSKDIQKLTAAFGHI 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0510 405 MobiDBLite consensus disorder prediction 145 164 - -
Ssu4g0510 405 CDD SANT 17 61 IPR001005 -
Ssu4g0510 405 PANTHER MYB DOMAIN PROTEIN 55 1 399 - -
Ssu4g0510 405 PANTHER HOMEODOMAIN-RELATED 1 399 - -
Ssu4g0510 405 SMART sant 13 63 IPR001005 -
Ssu4g0510 405 SMART sant 66 114 IPR001005 -
Ssu4g0510 405 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Ssu4g0510 405 MobiDBLite consensus disorder prediction 123 144 - -
Ssu4g0510 405 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Ssu4g0510 405 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ssu4g0510 405 MobiDBLite consensus disorder prediction 123 164 - -
Ssu4g0510 405 Gene3D - 68 145 - -
Ssu4g0510 405 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Ssu4g0510 405 CDD SANT 69 109 IPR001005 -
Ssu4g0510 405 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ssu4g0510 405 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Ssu4g0510 405 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ssu4g0510 405 Gene3D - 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0510 Ssu-Chr4 8061122 8062593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0510 1 156 MYB Transcription Factor Family AT4G01680 84.615 3.29e-96 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu4g0510 Myb_DNA-binding 8.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0510 K09422 - gmx:100037467 709.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0510 4 8061122 8062593 Ssu7g1849 7 37252045 37253549 ECH
Ssu7g1849 7 37252045 37253549 Ssu4g0510 4 8061122 8062593 ECH
Ssu4g0480 4 7653911 7655482 Ssu4g0510 4 8061122 8062593 ECH
Ssu4g0510 4 8061122 8062593 Ssu4g0510 4 8061122 8062593 ECH
Ssu4g0510 4 8061122 8062593 Ssu7g1877 7 37630964 37632496 PCT