Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0508 ATGAAGCTGATTCTAATAGCGCTTGCCTTTGTTTCTGTGGTAATCAACGCTAGATCTGAGCCTTTATTCGAAAACGATGCCGTTTCACTGGCAGCAACACCCGGACCTCCACCTCTCACGGTCCCCCTCACACTTATTCAGGGAGCTGCTTCCAAAGGAGccgTCTGTTTGGATGGAACATTGCCTGGTTACCACTTTCACCCTGGATTTGGATCTGGGGCAAATAGTTGGCTCATTCAATTGGAGGGAGGAGGATGGTGTAACACCATCAGAAGTTGTGTCTTTAGAAAAACTACCCGTCGTGGTTCCTCAAAATACATGGAAAAGCAACTACCATTCACGGGGATATTGAGCAATAAAGCTGAAGAAAACCCTGATTTCTTTAACTGGAACAGAGTTAAAGTACGGTACTGTGATGGGGCATCTTTCAGTGGAGATAGTCAAAACGAGGCTGCACAGCTTCAATTCCGAGGACAAAAAATATGGCAAGCTGCAATGGAGGAATTATTGTCCAAGGGAATGCAGAAGGCCAACCAGGCTCTTTTATCTGGATGCTCTGCGGGTGGTGTGGCATCTATTATACATTGTGATGAGTTCCAGAGCTTGTTTCCTACATCAACCAAAGTGAAATGTTTGAGTGATGCAGGGTTCTTCCTTGATGCAGTTGATGTATCTGGGGGTCACACACTGAGGAATCTGTTTGGAGGTGTAGTTAACTTACAGGAAGTGCAAAAAAATCTGCCAAAGAGTTGTCTCAACCAACTGGACCCAACTtcgTGCTTTTTTCCTCAGAATTTGATCAACCATGTCCAGACTCCGTTGTTTTTACTCAATGCAGCTTATGATGCATGGCAGCTCCAAGCAAGTTTGGCCCCACCTTCAGCAGATCCCCATGGCTCTTGGAATGATTGTAAATCAAATCATGCACACTGtaactcatctcaaattcagtTCCTCCAAGACTTCAGAAATCAAATGCTAAATGACGTGAAAGGCTTCTCAGGGACATCTCAAAATGGGTTATTCATAAATTCTTGTTTTGCTCACTGCCAGTCTGAGAGACAAGATACATGGTTTGCTGATGACTCTCCGCTTATTAACAACATGCCAATTGCAATTGCTGTTGGAGACTGGTATTTCGATCGGAAAACTGTCAAAGCTATTGACTGTGCTTACCCCTGTGACAATACCTGCCATAATCTGGTCTTCAATTTTGGTAGATCTGTCGTGGTGGACTACCAGTCCACAAGTGATGATGACACACCTACGAGTACCATGATATATTCCCGCTCCACGAGGCTGACTTTTAGTGCTGGCCTATATATGCTAAGTGCTTTATTGCCAATTACATGTTCCTAG 1359 0.4349 MKLILIALAFVSVVINARSEPLFENDAVSLAATPGPPPLTVPLTLIQGAASKGAVCLDGTLPGYHFHPGFGSGANSWLIQLEGGGWCNTIRSCVFRKTTRRGSSKYMEKQLPFTGILSNKAEENPDFFNWNRVKVRYCDGASFSGDSQNEAAQLQFRGQKIWQAAMEELLSKGMQKANQALLSGCSAGGVASIIHCDEFQSLFPTSTKVKCLSDAGFFLDAVDVSGGHTLRNLFGGVVNLQEVQKNLPKSCLNQLDPTSCFFPQNLINHVQTPLFLLNAAYDAWQLQASLAPPSADPHGSWNDCKSNHAHCNSSQIQFLQDFRNQMLNDVKGFSGTSQNGLFINSCFAHCQSERQDTWFADDSPLINNMPIAIAVGDWYFDRKTVKAIDCAYPCDNTCHNLVFNFGRSVVVDYQSTSDDDTPTSTMIYSRSTRLTFSAGLYMLSALLPITCS 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0508 452 Pfam Pectinacetylesterase 39 384 IPR004963 GO:0016787
Ssu4g0508 452 PANTHER NOTUM-RELATED 3 419 IPR004963 GO:0016787
Ssu4g0508 452 PANTHER PECTIN ACETYLESTERASE 3 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0508 Ssu-Chr4 8019469 8024862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0508 30 404 Carbohydrate Esterase AT2G46930 73.333 0.0 607
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0508 K19882 - gmx:100785270 822.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0508 4 8019469 8024862 Ssu7g1850 7 37264949 37269210 ECH
Ssu7g1850 7 37264949 37269210 Ssu4g0508 4 8019469 8024862 ECH
Ssu4g0481 4 7667869 7672364 Ssu4g0508 4 8019469 8024862 ECH
Ssu6g0516 6 7991351 7997058 Ssu4g0508 4 8019469 8024862 ECH
Ssu4g0508 4 8019469 8024862 Ssu4g0508 4 8019469 8024862 ECH
Ssu4g0508 4 8019469 8024862 Ssu7g1875 7 37616227 37620685 PCT