Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0506 ATGGCGTCTTCATTATCAGCTCAATTGGTTCAATGCCAGAACTCACTTCCTCGTCTTCAGGGTAATTTTGGCCAAGATGTGTGTAAGGTTCAGAGGCCACGTGTGGTCTGTTGCAGTACCAGATCACAGCTCGGCTACGGTAAAGCATTGGCGTCAAGATCACATTATGCCTCGAGGTTTTCTATCACGCAACAATCTCAAGCAAGGTCAATTAGATATCGGAGAATGACATGCAATGCTGCAGACAATGTTCTAGAGCTTCAAGCCAACGTGACAACCAAGTGTTTCTTTGATatagaagttgggggtgaacctGTGGGCAGGATTGTTTTGGGCCTATTTGGAGAGGTCGTTCCTGAAACAGTTGAAAATTTCCGTGCTTTGTGCACAGGTGAGAAAGGATATGGTTACAAAGGAAGCTCCTTCCATCGTATAATCAAAGATTTCATGATTCAGGGAGGAGACTTTACAGAAGGAAATGGAACTGGTGGAATTAGTATCTATGGTCCTAGTTTTAAAGATGAGAGTTTTGCCTTGAAGCATATTGGCCCTGGAGTTCTGAGCATGGCAAATGCTGGCCCTAATACCAATGGTAGTCAATTTTTCATTTGCACTGTAAAGACTCCATGGCTAGACAATCGTCATGTTGTATTAGGACATGTCATTGATGGAATGGATGTTGTGAAGACACTTGAATCCCAGGAGACGAGTAGGTTAGATATCCCTCGGAAGCCTTGCAGAATTGTTAATTGTGGAGAACTGCCTACAGATGGTTGA 777 0.4234 MASSLSAQLVQCQNSLPRLQGNFGQDVCKVQRPRVVCCSTRSQLGYGKALASRSHYASRFSITQQSQARSIRYRRMTCNAADNVLELQANVTTKCFFDIEVGGEPVGRIVLGLFGEVVPETVENFRALCTGEKGYGYKGSSFHRIIKDFMIQGGDFTEGNGTGGISIYGPSFKDESFALKHIGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVLGHVIDGMDVVKTLESQETSRLDIPRKPCRIVNCGELPTDG 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0506 258 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 96 253 IPR002130 GO:0000413|GO:0003755
Ssu4g0506 258 Gene3D - 79 257 IPR029000 -
Ssu4g0506 258 CDD cyclophilin_ABH_like 94 252 - -
Ssu4g0506 258 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 200 212 IPR002130 GO:0000413|GO:0003755
Ssu4g0506 258 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 128 IPR002130 GO:0000413|GO:0003755
Ssu4g0506 258 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 213 228 IPR002130 GO:0000413|GO:0003755
Ssu4g0506 258 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 142 154 IPR002130 GO:0000413|GO:0003755
Ssu4g0506 258 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 185 200 IPR002130 GO:0000413|GO:0003755
Ssu4g0506 258 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 97 252 IPR002130 GO:0000413|GO:0003755
Ssu4g0506 258 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 137 154 IPR020892 GO:0003755|GO:0006457
Ssu4g0506 258 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 50 257 - -
Ssu4g0506 258 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP20-3, CHLOROPLASTIC 50 257 - -
Ssu4g0506 258 SUPERFAMILY Cyclophilin-like 87 254 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0506 Ssu-Chr4 8005642 8008355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0506 107 251 U-box Gene Family AT5G67530 43.836 1.72e-29 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0506 K03768 - gmx:100785805 467.618