Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0505 ATGGGCAACGGCACTTCTCGTGTTGTTGGATGTTTGGTGCCATTTAATGGCAAAAGTGGGGTTGATTTGGAGTTTCTAGAGCCATTAGATGAAGGGTTGGGCCATTCCTTTTGTTATGTGAGGCCATCTATTTTTGAATCTCCTGCCATTACCCCATCAAACTCTGAGAGGTTTACTGTTGATTCGAGTACCCTTGATTCTGAGACATTGAGTGGGTCGTTTAGGCATGAGAGTATTGAAGAGAGGCCCGGCAAGAATGTTCCGGAAACCACATTCAAAACGATATCCGGGGCTTCGGTTAGTGCCAATGTTTCCGCTGCCAGGACTGGTAACCAGAATGCACTACTTGCTAGTGATGTTCTAGAGCCTGCTGCGTCGTTTGAGGGAACCTCGTCGTTTTCTGCAATCCCCTTGCAGCCTGTTCCCCGCGGTTCTGGACCTTTGAACGGTTTCATGTCGGGACCGTTGGAGAGATTTGCTTCCGGTCCCTTGGATAAGGGTGGTGGTTTCATGTCTGGGCCGATAGAGAAGGGAGTTATGTCAGGTCCTCTTGATGCCACTGACAAGTCCAACTTTTCAGCACCGCTGGCACGTGGTCGTCGAAGGCCACACCTCCAACGCCTCATGAGAAGTGTGAGTGGTCCTATGAGGAACACTCTTTCTCGGACTTTTTCGAAGCACTCCGTGGGTGGCAGTTGGGTGCAGCGGCTATTCCTTCATCCGGTGTCTCAGCTAGCTTGGAATTCCAAAGAGGCAAAGTTTCGGCCTGAAGTTTCTAGAAACTGTGTTGAAATTGGATCGTCCGAATTAGAGTATAAACATACACAAAATTTGCAGTGGGCTCATGGTAAGGCCGGTGAAGATAGGGTTCATGTTGTGCTTTCTGAAGAACAAGGGTGGTTGTTTATTGGGATATATGATGGTTTTAGTGGACCAGATGCACCTGATTTTCTGATGAGtcatctttataaatatatagacaaGGAATTAGAAGGGTTGCTCTGGGATTATGAGGATAATCCCGTTGATCCACTTAAACCTGAAGTCCTTAAAAATGGAAATGATGTAGTTGCTCTAGAATGTGGTAGGGAGGAAATGTCAGATGCTCATACCATTTCAAATGAAGAAAGTTCTTGCTGTGTAGAAACTTCTTGTCCAGTAATGGTCAAGGATCAATCATCTAATTGTGAGATAGTGGAAGTAAATGCTGAAGTTAAGATAAATGTTGAACAGAAAAATTGTGGAAGCCCTAGTATTGTCCATACTGTTACTGCATCTGTTCCAATTGGACAATTGACTGGTCAAGGCAGAAGAAGTGTGCGACTTTATGAGCTACTTCAGATGGAATCTTGGAATGAACAAGTGTCAGAACAAGGCAAGGATTCTTTAGTTCCTGGGGAAATAACACAAGAGAGGCGGATGAGATTCTGCTCACCTGATGGTAAAGATGATAGATCTAGACATCAGGATGAATGTCCCACTACTTCAGGGGAAAATGGGGGTGCTGGGTTTAATTCGACCAACCAGGAGCCAATAGCTCCTTTTTCTGTTTCAGGACAAAGACAGAATACAAGGAAGTCATTTATCGGTACAAAAATCAGAAAAATGTACAGGAAGCAGAAGTCCTTACGTAAGAAACTTTTTCCTTGGAGTTATGATTGGCATAGGGAGGAAACTTGTATTGACAAGAAATTAGTGGAATCCTCGGGACCCATTAGAATATGCAAGTCTGGAGTAGATCATAATGCAGTTTTAAAAGCAATGGCTCAGGCTCTTGAAAGAACAGAAGAGGCATACATGAAAATGGTGGAGaataatatggacaaaaatccAGAGCTTGCCTTAATGGGATCGTGTGTTTTAGTGATGCTGATGAAGGATCAAGATGTTTATGTTATGAACGTTGGAGATAGTCGTGtaattttggctcaagaacgaCCAAATGATCGTCATCCTAATCCATGTCTCATCAAAGATGACATGAGGCATAGGAATCGATCTAGAGAGTCATTAGTGGGCATGGAGCTGGATAGAATTTCGGAGGAGTCCCCAGTGCACAATATAAACAAGCATGTTAACAAGATAAACAAAAACAGAGAGATATCCATGTGCAGATTGAGAATGAGGGCTGTTCAGCTTTCCACAGATCACAGCACAAGTATTGAAGAGGAAGTTTTTAGAGTAAGAGCGGAACACCCTGATGATAATCAGGCCATATTTAATGATCGAGTGAAAGGACAATTAAAAGTGACCAGAGCATTTGGTGCTGGATTCCTGAAGAGGCCATCTTTTAATGAACCGCTACTGAAGATGTTTCGAGTTGATTATGTGGGCAATGCTCCTTACCTAAGTTGCGCATCTTCTGTTCTTCATCACCGACTTTCCTCGAGTGATCGGTTCCTGGTACTCTCCTCTGATGGACTTTATCAATATTTCAGCAATGAAGAGGTAGTTGCCCATGTCACTTGGTTCATGGAAAATGTTCCCGAAGGTGACCCTGCACAATACCTTATCGCAGAGCTTCTCTTCCGTGCTGCTAAAAAGAATGgAATGGATTTTCATGAATTGCTCGATATTCCTCATGGAGATCGGCGTAAATATCATGATGATGTCTCTGTTATGGTGGTTTCGTTGGAGGGAAGGATTTGGAGATCATCgggataa 2664 0.4276 MGNGTSRVVGCLVPFNGKSGVDLEFLEPLDEGLGHSFCYVRPSIFESPAITPSNSERFTVDSSTLDSETLSGSFRHESIEERPGKNVPETTFKTISGASVSANVSAARTGNQNALLASDVLEPAASFEGTSSFSAIPLQPVPRGSGPLNGFMSGPLERFASGPLDKGGGFMSGPIEKGVMSGPLDATDKSNFSAPLARGRRRPHLQRLMRSVSGPMRNTLSRTFSKHSVGGSWVQRLFLHPVSQLAWNSKEAKFRPEVSRNCVEIGSSELEYKHTQNLQWAHGKAGEDRVHVVLSEEQGWLFIGIYDGFSGPDAPDFLMSHLYKYIDKELEGLLWDYEDNPVDPLKPEVLKNGNDVVALECGREEMSDAHTISNEESSCCVETSCPVMVKDQSSNCEIVEVNAEVKINVEQKNCGSPSIVHTVTASVPIGQLTGQGRRSVRLYELLQMESWNEQVSEQGKDSLVPGEITQERRMRFCSPDGKDDRSRHQDECPTTSGENGGAGFNSTNQEPIAPFSVSGQRQNTRKSFIGTKIRKMYRKQKSLRKKLFPWSYDWHREETCIDKKLVESSGPIRICKSGVDHNAVLKAMAQALERTEEAYMKMVENNMDKNPELALMGSCVLVMLMKDQDVYVMNVGDSRVILAQERPNDRHPNPCLIKDDMRHRNRSRESLVGMELDRISEESPVHNINKHVNKINKNREISMCRLRMRAVQLSTDHSTSIEEEVFRVRAEHPDDNQAIFNDRVKGQLKVTRAFGAGFLKRPSFNEPLLKMFRVDYVGNAPYLSCASSVLHHRLSSSDRFLVLSSDGLYQYFSNEEVVAHVTWFMENVPEGDPAQYLIAELLFRAAKKNGMDFHELLDIPHGDRRKYHDDVSVMVVSLEGRIWRSSG 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0505 887 Gene3D - 520 884 IPR036457 -
Ssu4g0505 887 PANTHER PROTEIN PHOSPHATASE 2C 32 11 887 - -
Ssu4g0505 887 Gene3D - 249 407 IPR036457 -
Ssu4g0505 887 Coils Coil 585 605 - -
Ssu4g0505 887 CDD PP2Cc 584 878 IPR001932 -
Ssu4g0505 887 MobiDBLite consensus disorder prediction 493 524 - -
Ssu4g0505 887 Pfam Protein phosphatase 2C 587 647 IPR001932 -
Ssu4g0505 887 Pfam Protein phosphatase 2C 703 849 IPR001932 -
Ssu4g0505 887 PANTHER PROTEIN PHOSPHATASE 2C 11 887 IPR015655 GO:0004722|GO:0006470
Ssu4g0505 887 MobiDBLite consensus disorder prediction 473 492 - -
Ssu4g0505 887 MobiDBLite consensus disorder prediction 470 524 - -
Ssu4g0505 887 SUPERFAMILY PP2C-like 283 879 IPR036457 -
Ssu4g0505 887 ProSiteProfiles PPM-type phosphatase domain profile. 269 878 IPR001932 -
Ssu4g0505 887 SMART PP2C_4 271 876 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0505 Ssu-Chr4 7982951 7990253 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0505 1 887 PP2C-type Phosphatase Gene Family AT2G46920 63.867 0.0 1109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0505 - - gmx:100786856 1712.58