Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0503 AtggaaaaattcattttgagtGGTCTTACATTGTTTGTGGTGTTATTCACTACAGAACTCGGAATAGCATCCGCTGTTTGGCAGCGTGCTCATGCAACTTTCTACGGTGGGAGTGATGCCTCAGGAACAATGGGAGGCGCATGTGGCTATGGAAATCTCTACACAGATGGTTATGATACAAAAACAGCTGCCTTGAGTACTGTTTTGTTTAATGACGGCAAGTCATGTGGTGGTTGCTATAGAATAGTTTGTGACGCAAACCAAGTGCCCCAATGGTGCCTCCATAGTTGTTACTGCCACAGTTTTCTGGCCCGGCCCCCAAACTACGCACTCCCCAATGACAATGGTGGTTGGTGTAATCCTCCTAGGCCACACTTTGACATGTCTCAACCTGCCTCTGAGACAATAGCCAAGTACAAAGCTGGAATTGTTATAGTTGGGTGCAAAAGAAGTGGAGGCATTAGATTTACCATCAATGGGAGAGACTGTTTCGAATTAGTGCTTATAAGCAACGTAGGTGGAGCTGGAGTGATTTCCCGAGTTTGGATCAAAGGGTCCAAAATGAGTAACTGGGAATCCATGACAAGGAATTGGGGTGCTAACTGGCAAAGCTCAAAATATCTCAATGGTCAGAGCCTGTCTTTCAGAGTTCAGCTCCGCAATGGAAGGACTCGCACAGCAAATAATGTAGCACCGTCCAATTGA 705 0.4496 MEKFILSGLTLFVVLFTTELGIASAVWQRAHATFYGGSDASGTMGGACGYGNLYTDGYDTKTAALSTVLFNDGKSCGGCYRIVCDANQVPQWCLHSCYCHSFLARPPNYALPNDNGGWCNPPRPHFDMSQPASETIAKYKAGIVIVGCKRSGGIRFTINGRDCFELVLISNVGGAGVISRVWIKGSKMSNWESMTRNWGANWQSSKYLNGQSLSFRVQLRNGRTRTANNVAPSN 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0503 234 PANTHER EXPANSIN 6 234 - -
Ssu4g0503 234 PANTHER EXPANSIN-A15 6 234 IPR002963 GO:0009664
Ssu4g0503 234 Gene3D - 154 234 IPR036749 -
Ssu4g0503 234 Gene3D - 17 150 IPR036908 -
Ssu4g0503 234 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Ssu4g0503 234 PRINTS Expansin/Lol pI family signature 229 234 IPR007118 GO:0005576
Ssu4g0503 234 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Ssu4g0503 234 PRINTS Expansin/Lol pI family signature 191 205 IPR007118 GO:0005576
Ssu4g0503 234 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Ssu4g0503 234 SMART dpbb_1 62 148 IPR007112 -
Ssu4g0503 234 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 163 234 IPR007117 -
Ssu4g0503 234 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 150 IPR007112 -
Ssu4g0503 234 Pfam Lytic transglycolase 62 146 IPR009009 -
Ssu4g0503 234 SUPERFAMILY PHL pollen allergen 150 234 IPR036749 -
Ssu4g0503 234 Pfam Expansin C-terminal domain 154 232 IPR007117 -
Ssu4g0503 234 SUPERFAMILY Barwin-like endoglucanases 21 171 IPR036908 -
Ssu4g0503 234 PRINTS Expansin signature 200 221 IPR002963 GO:0009664
Ssu4g0503 234 PRINTS Expansin signature 152 164 IPR002963 GO:0009664
Ssu4g0503 234 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Ssu4g0503 234 PRINTS Expansin signature 164 185 IPR002963 GO:0009664
Ssu4g0503 234 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Ssu4g0503 234 PRINTS Expansin signature 229 234 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0503 Ssu-Chr4 7967244 7968197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0503 4 234 Expansin Gene Family AT4G01630 68.067 1.68e-114 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0503 - - gmx:100777045 408.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0503 4 7967244 7968197 Ssu7g1868 7 37549847 37550886 PCT