Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0495 ATGGGCCTCAAGCCCACAGCGAGTTTCGTCCCCTCCGCCGTCGCCACGCCCAATTCCTCCCTCCTCAGCGAAGAAGCCTTCAAAGGACTAGGCCGCGACTTCGACCGAAACGACGACGAATTCGACCTCGCCTCCGATTCCAACGCCGCCGAATCCGCGAACCCCGACGAACTCGACATTTCGAAGCTCGACTTGCCCTCGCGCCTCGTCGAGTCCCTCCAGAGCCGAGGGATTACTCACCTTTTCCCCATTCAGAGAGCGGTGTTAGTACCTGCACTAGAAGGTAGAGACATCATTGCTCGAGCGAAGACCGGGACCGGAAAGACATTAGCGTTCGGGATTCCGGTTATTAGAGGCCTCACTGAAGATGAACATGCACCTTCTCACAGGCGGTCTGGCAAGCTTCCGAGAGTTTTGGTGCTTGCGCCTACGAGGGAGTTGGCGAAGCAAGTGGAGAAGGAGATAAAGGAATCTGCGCCTTATCTCAACACTGTTTGTGTTTATGGAGGTGTTTCTTATGTTACGCAGCAGAGTGCGCTTTCGCGCGGTGTGGATGTGGTGGTTGGGACGCCGGGGAGAATAATTGACTTGATAAATGGGAACAGCCTTAAGCTGAGTGAGGTTCAGTATTTGGTCCTCGATGAAGCGGACCAGATGCTTGCTGTTGGGTTCGAGGAAGATGTGGAAGTGATTTTGGAGAATCTTCCTTCTCAGAGGCAGAGCATGCTTTTCTCTGCAACCATGCCCGGTTGGGTGAAGAAGTTGGCGAGGAAATATTTGGACAACCCACTCACAATTGATTTGgttggtgatgaagaagaaaagctTGCTGAAGGGATAAAACTTTATGCTATAGCAGCCACTGCCACTTCAAAACGGACAATTCTTTCTGATCTTATAACTGTATATGCAAAGGGTGGGAAGACTATAGTTTTTACGCAGACAAAAGAGATGCTGATGAATATATTGTCTGAAGCACTGCATGGCGATATATCTCAGCATCAGAGGGAGAGAACATTGAATGGTTTCCGGCAAGGAAAATTCACAGTGCTTGTTGCCACTGATGTTGCAGCTCGTGGACTTGATATTCCCAATGTTGATTTGATTATCCATTATGAGCTTCCCAATGATCCCGAGACTTTCGTACATCGCTCTGGTCGTACTGGGCGTGCAGGAAAACAAGGTACTGCCATTCTGTTGTACACCAGTAGCCAGAGGAGAACAGTTAGATCCCTTGAACGTGACGTAGGCTGCAAGTTTGAATTTGTTAGTCCACCAGCTATGGAAGTGGTTTTGGAGTCATCTGCTGAGCAGGTTGTTGCTACACTTAATGGAGTTCATCCGGAGTCTGTTGAGTTCTTCACCCCAACTGCTCAAAAACTGATCGAAGAACAAGGAACAAGCGCCCTTGCAGCTGCACTTGCCCAACTGAGTGGGTTCTCCCGACCTCCATCATCCCGGTCTCTTATCACTCACGAACAGGGATGGATTACACTGCAACTAACTCGAGATTCAGATAATAGAAGATATTTTTCAGCAAGATCAGTCACTGGGTTTCTTTCTGATGTTCATTCTGCAGCTGCTGATGAAATTGGAAAAATCCATTTAATTGCAGATGAAAGGGTTCAAGGAGCCGTTTTTGATCTTCCTGAGGACATTGCTAAAGAGTTACTTAATAGGGACATACCACCTGGAAACACCATTTCCAAGATCACCAAGCTACCTCCTTTGCAAGATGATGGGCCTCCAAGTGATTTCTATGGGAAGTTTTCTGACAGAGATCGAAGTAACCGAAGAGGTCCTACTTCTAGGGGAGGTTTTACTTCTAGGGATCGGAGAGGTTTTACTTCTAGGGGAGGTTTTACTTCACGGGGATGGGATGGGGACCAAGACTCTGATGATAACTTTGGTGATCGATCTAGGAGAGGTggtagaaattttaaaactggCAATAGCTGGTCTCGAGCAGCAGGAAGAAGCAGTGAGGATGATTGGCTAATTGGAGGTAGACGATCAAGCAGGCCTTCATCATCGGACAGAGGCGGGTTTGGAGGGGCCTGTTTTAATTGCGGGGAATCTGGGCATCGTGCATCAGATTGTCCGAAGACTTCAAACAGGCGAAGCTATTTTTAA 2133 0.4749 MGLKPTASFVPSAVATPNSSLLSEEAFKGLGRDFDRNDDEFDLASDSNAAESANPDELDISKLDLPSRLVESLQSRGITHLFPIQRAVLVPALEGRDIIARAKTGTGKTLAFGIPVIRGLTEDEHAPSHRRSGKLPRVLVLAPTRELAKQVEKEIKESAPYLNTVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLINGNSLKLSEVQYLVLDEADQMLAVGFEEDVEVILENLPSQRQSMLFSATMPGWVKKLARKYLDNPLTIDLVGDEEEKLAEGIKLYAIAATATSKRTILSDLITVYAKGGKTIVFTQTKEMLMNILSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKQGTAILLYTSSQRRTVRSLERDVGCKFEFVSPPAMEVVLESSAEQVVATLNGVHPESVEFFTPTAQKLIEEQGTSALAAALAQLSGFSRPPSSRSLITHEQGWITLQLTRDSDNRRYFSARSVTGFLSDVHSAAADEIGKIHLIADERVQGAVFDLPEDIAKELLNRDIPPGNTISKITKLPPLQDDGPPSDFYGKFSDRDRSNRRGPTSRGGFTSRDRRGFTSRGGFTSRGWDGDQDSDDNFGDRSRRGGRNFKTGNSWSRAAGRSSEDDWLIGGRRSSRPSSSDRGGFGGACFNCGESGHRASDCPKTSNRRSYF 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0495 710 Pfam DEAD/DEAH box helicase 82 255 IPR011545 GO:0003676|GO:0005524
Ssu4g0495 710 Gene3D - 656 709 - -
Ssu4g0495 710 Pfam Zinc knuckle 686 702 IPR001878 GO:0003676|GO:0008270
Ssu4g0495 710 MobiDBLite consensus disorder prediction 627 645 - -
Ssu4g0495 710 CDD SF2_C_DEAD 280 401 - -
Ssu4g0495 710 CDD GUCT_Hera 486 565 - -
Ssu4g0495 710 CDD DEADc 69 267 - -
Ssu4g0495 710 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 89 266 IPR014001 -
Ssu4g0495 710 Gene3D - 59 270 IPR027417 -
Ssu4g0495 710 Pfam Helicase conserved C-terminal domain 292 392 IPR001650 -
Ssu4g0495 710 MobiDBLite consensus disorder prediction 586 600 - -
Ssu4g0495 710 Pfam GUCT (NUC152) domain 479 578 IPR012562 GO:0003723|GO:0004386|GO:0005524
Ssu4g0495 710 Gene3D - 284 469 IPR027417 -
Ssu4g0495 710 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 295 432 IPR001650 -
Ssu4g0495 710 ProSiteProfiles Zinc finger CCHC-type profile. 687 702 IPR001878 GO:0003676|GO:0008270
Ssu4g0495 710 SMART c2hcfinal6 686 702 IPR001878 GO:0003676|GO:0008270
Ssu4g0495 710 SUPERFAMILY Retrovirus zinc finger-like domains 667 707 IPR036875 GO:0003676|GO:0008270
Ssu4g0495 710 PANTHER - 16 700 - -
Ssu4g0495 710 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 136 413 IPR027417 -
Ssu4g0495 710 MobiDBLite consensus disorder prediction 560 710 - -
Ssu4g0495 710 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 16 700 - -
Ssu4g0495 710 SMART ultradead3 77 283 IPR014001 -
Ssu4g0495 710 SMART helicmild6 317 392 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0495 Ssu-Chr4 7849461 7855024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0495 11 414 Eukaryotic Initiation Factors Gene Family AT1G72730 34.772 4.29e-62 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0495 - - gmx:100789516 1198.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0495 4 7849461 7855024 Ssu7g1860 7 37389557 37394804 PCT