Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0489 ATGCGGTTGGTACGTCACCCCCACATCGTGGCGCTAAAAAAAGTGATGATCAACAAGGCGAAAATATTCATGGTGGTGGAATACATCAAGGGAGGTGAACTTTTCACGAACGTCGCAAAAGGGAAGATGAAGGAGGATGTGGCCATAAAGTACTTCCAACAACTCATCAGCACCGTTGACTTCTGCCACAGCCACAATGTCACCCACTGCAACTTGAAACCGGAGAATTTGCTCCTCAATGAGAATGAAGACCTTAAAGTCTCTGACTTCGTGTTGTCGGCGTTGCCAGACCAGCGTAGATCTGACGAGATGCTCCTCACGCTGACGTATATGGAGTCGGAGGTGCTGAAGAAAAAGGCTATGATGGTTCCAAGGCTGATATATGGTCTTACGGGGTCATTTTCTTTGCTTTGCTTTCTGGATATCTTCCGTTTCAGGGTGAGAATGTGA 450 0.4711 MRLVRHPHIVALKKVMINKAKIFMVVEYIKGGELFTNVAKGKMKEDVAIKYFQQLISTVDFCHSHNVTHCNLKPENLLLNENEDLKVSDFVLSALPDQRRSDEMLLTLTYMESEVLKKKAMMVPRLIYGLTGSFSLLCFLDIFRFRVRM 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0489 149 Gene3D Transferase(Phosphotransferase) domain 1 1 126 - -
Ssu4g0489 149 PANTHER - 1 120 - -
Ssu4g0489 149 SMART serkin_6 1 143 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0489 149 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 25-RELATED 1 120 - -
Ssu4g0489 149 ProSiteProfiles Protein kinase domain profile. 1 149 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0489 149 SUPERFAMILY Protein kinase-like (PK-like) 1 119 IPR011009 -
Ssu4g0489 149 Pfam Protein kinase domain 1 121 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0489 Ssu-Chr4 7759060 7759509 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0489 1 120 CBL-interacting serine-threonine protein kinases AT5G25110 63.710 5.03e-48 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Ssu4g0489 Pkinase 6.5e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0489 - - gmx:100804244 174.866