Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0488 ATGGCGTGGCGCGAGCTTGGAAAGAAGagaatatatatgaattttactaGAGCTTTGACTACAACACCATTTAGGCATGTGACAGGATCAAATTTTGCATCCGTCTTTGCTGTGCAATCTGTTTATGCATCAGCAGGATATGTGCCGGATTTCATCAACCAATCATCTCATGGAGTGGCTGGTTTTGGCAGTGAGACTAAAGAATGTGGAATACGGTGCTTCCATGCTAGTTCGCAAGTCTGGGCAAGAAGTGATGGAACATTAGGTTTGAAGACCCCAAAGAGGGTGAAATATGTGAGAAGGGATGGTAGAAACCAGCCACCTGTTGATGCTCCTTATGTCCGTTGTAATGTCACAGCTACCAAATCTAATCctgataaaataatagaaatatttgaAGGCATAACCCTTGTTGAACTGGCAAAGCGCACCGGAAAATCAGTTTCTTCTTTGCAGGATATCCTCACTAATGTTGGTGAAAAGGTTGAATCAGAGTTTGAGCTTCTCAGCATGGATATTGCTGAACTTGCCGCAATGGAGGCTGGTGTCAATGTTAAGAGGCTACATTCAGCTGAAGGTGCAGAAATTTTACCACGTCCTGCAGTTGTAACAGTGATGGGTCATGTTGATCATGGTAAAACTTCTCTTCTTGATACCTTGCGTCAAACATCAGTGGCAGCCAAGGAGGCTGGTGGCATAACTCAACATCTAGGTGCTTTTGTGGTGGCCATGCCATCAGGAGCATCAATCACATTTCTTGATACTCCTGGTCATGCTGCATTTAGTGCAATGCGGGCAAGAGGTGCAGCAGTTACAGATATAGTGGTGCTGGTTGTTGCTGCAGATGATGGTGTGATGCCTCAAACACTTGAAGCCATGTCCCATGCAAAAGCAGCTAATGTACCAATTGTAGttgcaattaataaatgtgataaaccAGGTGCAAATCCTGAAAAAGTTAAACTGCAGCTTGCTACAGAGGGCTTGCTGCTGGAGGAGATGGGTGGGGATGTTCAGGTTGTCGAAGTTTCAGCAACTGAAAAAATTGGACTGGATAACCTAGAGGAAGCTTTACTACTTCAGGCTGATATGATGGATCTTAAAGCACGAATTGATGGGCCTGCTCAAGCATATGTGGTGGAAGCAAGACTTGACAAAGGACGGGGTCCATTGGTAACTACTATAGTGAAGGCAGGGACTCTAGTCTGTGGTCAGCATGTGGTTGTAGGCTCACAATGGGGAAGAATAAGGGCTATTAAAGATATGGCAGGGAAGTTAACTCAACGAGCAACACCTGCTATGCCTGTTGAGATTGAAGGGCTTAGAGGGCTGCCAATGGCTGGTGATGATGTTATTGTTGTTCATTCTGAGGAGCGAGCTAGAATGCTTAGTTCTGGTAGGCAAAGGAAATATGAGGAGAACAGGCTTAGGAATAAGATGATACAGGCTAAGCCAACTACTTCAGATGATTCCAAGGAGGTACCACAGAGGGTTGAAATGCCAGTAATAGTAAAAGCAGATGTTCAGGGAACTGTTCAAGCCGTCACCGATGCATTGAAAACTTTAAATAGTGCTCAGGTTTTCGTCAATGTTGTCCATGTTGGTGTTGGGCCTATTTCTCAATCTGATGTGGACCTAGCACAGGCTTGTGGTGCTTGCATAGTTGGATTCAACGTCAAAAGTCCGCCTACTTCTCTTGGTCAGGCAGCAACTCGTGCCAGCATCAAGATAATTCTGCACCGTGTAATTTACCACCTCTTGGAGGACATAGGCAATTTGATAATAGAGAAGGCCCCTGGGACTTCTGAAACCCAGGTTGCTGGGCAAGCAGAAGTGCTGAATATCTTTGAAGTCAAAGGGAGCAAGTCCAAGGGACCTGATGTTAAGATAGCTGGTTGTCGTGTTGTTGATGGTTTTGTGACAAGGTCAGCAACCATGAGGCTTCTGAGAAGTGGGGAAGTCGTGTTTGAAGGACTTTGTACATCTCTTAAGCGAGAGAAGCAGGATGTGGATACTGTGAAGAAGGGAAATGAGTGCGGACTTGTAATCAACAATTGGTATGATTTCCAGATTGGAGACGTCATCCAGTGCTTGGAACAAGTCGTAAGGAAGCCCAAGTTCATTAAGTCGGAGAGTGGTGCTGTTCGAATCGAGTGCTGA 2160 0.4426 MAWRELGKKRIYMNFTRALTTTPFRHVTGSNFASVFAVQSVYASAGYVPDFINQSSHGVAGFGSETKECGIRCFHASSQVWARSDGTLGLKTPKRVKYVRRDGRNQPPVDAPYVRCNVTATKSNPDKIIEIFEGITLVELAKRTGKSVSSLQDILTNVGEKVESEFELLSMDIAELAAMEAGVNVKRLHSAEGAEILPRPAVVTVMGHVDHGKTSLLDTLRQTSVAAKEAGGITQHLGAFVVAMPSGASITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGVMPQTLEAMSHAKAANVPIVVAINKCDKPGANPEKVKLQLATEGLLLEEMGGDVQVVEVSATEKIGLDNLEEALLLQADMMDLKARIDGPAQAYVVEARLDKGRGPLVTTIVKAGTLVCGQHVVVGSQWGRIRAIKDMAGKLTQRATPAMPVEIEGLRGLPMAGDDVIVVHSEERARMLSSGRQRKYEENRLRNKMIQAKPTTSDDSKEVPQRVEMPVIVKADVQGTVQAVTDALKTLNSAQVFVNVVHVGVGPISQSDVDLAQACGACIVGFNVKSPPTSLGQAATRASIKIILHRVIYHLLEDIGNLIIEKAPGTSETQVAGQAEVLNIFEVKGSKSKGPDVKIAGCRVVDGFVTRSATMRLLRSGEVVFEGLCTSLKREKQDVDTVKKGNECGLVINNWYDFQIGDVIQCLEQVVRKPKFIKSESGAVRIEC 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0488 719 Gene3D Translation factors 371 487 - -
Ssu4g0488 719 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 198 368 IPR000795 GO:0003924|GO:0005525
Ssu4g0488 719 SUPERFAMILY Translation proteins 603 704 IPR009000 -
Ssu4g0488 719 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 495 607 IPR036925 -
Ssu4g0488 719 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 84 710 IPR015760 -
Ssu4g0488 719 CDD mtIF2_IVc 608 697 - -
Ssu4g0488 719 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 389 IPR027417 -
Ssu4g0488 719 Hamap Translation initiation factor IF-2 [infB]. 8 705 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Ssu4g0488 719 Pfam Elongation factor Tu GTP binding domain 203 359 IPR000795 GO:0003924|GO:0005525
Ssu4g0488 719 TIGRFAM IF-2: translation initiation factor IF-2 127 702 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Ssu4g0488 719 TIGRFAM small_GTP: small GTP-binding protein domain 201 352 IPR005225 GO:0005525
Ssu4g0488 719 Pfam Translation-initiation factor 2 491 590 IPR023115 -
Ssu4g0488 719 CDD IF2_mtIF2_II 374 469 IPR044145 -
Ssu4g0488 719 PANTHER TRANSLATION INITIATION FACTOR IF-2, MITOCHONDRIAL 84 710 - -
Ssu4g0488 719 Gene3D - 196 370 IPR027417 -
Ssu4g0488 719 SUPERFAMILY Translation proteins 372 454 IPR009000 -
Ssu4g0488 719 Gene3D - 495 600 IPR036925 -
Ssu4g0488 719 Gene3D Translation factors 602 704 - -
Ssu4g0488 719 CDD IF2_eIF5B 202 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0488 Ssu-Chr4 7736401 7741079 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0488 199 588 Eukaryotic Initiation Factors Gene Family AT1G21160 27.790 7.30e-27 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0488 K02519 - gmx:100781314 1278.08