Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0485 ATGTCCTCCTCAAGGCCCAGCCAATCATCCAGCAATAATTCTGGCAGATCATCAAGACACAGTGCTAGGATTCTTGCTCAGACAACTTTAGATGCAAAACTGCACGCAACTTTTGAGGAATCAGGTAGTTCTTTTGACTACTCCAATTCAGTGAGATTGTCTCCTGGTACAGGCACTACTAGTGGAACTGGAAACCATCAATCAAGGTCTGATAGTGTAACATCTGCTTACCTCCATCAGATACAGAAAAGCAAGCTTATCCAGCCATTTGGATGCTTGCTAGCCTTGGATGAGAAAACACACAAGGTCATTGCTTACAGTGAGAATGCACCTGAAATGCTCACCATGGTTAGTCATGCTGTCCCAAGTGTTGGTGACCACCTTGCTCTTGGCATTGGCACTGACATAAGAACTATTTTCACTGCCCCAAGTGCTGCTGCTTTTCAGAAGGCACTAGGATTTGGGGAGGTTTCACTTCTTAACCCCATTCTAGTCCATTGCAAGACCTCTGGGAAGCCCTTTTATGCAATTATCCATCGCGTCACCAGTAGTGTGATCATTGATTTTGAGCCAGTCAAGCCTCATGAAGTTCCCATGACTGCAGCTGGTGCCCTGCAATCCTACAAGCTTGCAGCAAAAGCAATAACTAGATTGCAATCCTTGCCTAGTGGGAGCTTGGAAACGCTATGTGACACCATGGTTCAAGAGGTTTTTGAACTCACAGGTTATGACAGGGTGATGGCTTATAAATTTCATGAGGATGATCATGGGGAAGTGATTGCTGAAGTGAAAAGGCCAGGCCTAGAGCCATATCTGGGGTTGCACTACCCAGCCACTGATATTCCCCAGGTGACACGCTTTTTGTTTATGAAGAACAAGGTCCGCATGATAGTTGATTGTCGTGCAAAGCATGTGAAGGTGCTTCAAGACAGAAAAATTCCATTTGATTTAACTTTGTGTGGATCAACCTTGAGGGCTGCTCATAGTTGCCACTTGCAATACATGGAGAACATGAATTCCAGTGCTTCCTTGGTTATGGCAGTTGTGGTCAATGACAATGATGAAGATGGGGATAGCTCTGATGCTGTTCAGCcacaaaagagaaagagacTATGGGGTTTAGTAGTTTGCCATCACACTACTCCCAGGTTTATTCCCTTCCCTCTTAGGTATGCTTGTGAATTCCTGGCTCAAGTATTTGCCATCCATGTGAACAAAGAATTAGAGTTAGAGTATCAGATTGTTGAGAAGAACATCCTGCGAACTCAAACACTCTTGTGTGACATGCTGATGCGAGATGCACCCCTAGGTATTGTATCACAAAGTCCTAATATAGTGGATCTTGTGAAGTGTGATGGAGCAGCCCTGTTGTATAAAAACAAGGTATGGAGATTAGGGGTAACACCAAGTGAGTCACAGATAAGAGAGATAGCCTTGTGGCTCTCCGAGTGCCATAGGGATTCCACAGGTTTGAGTACAGATAGCTTGTCTGATGCAGGCTTCCCTGGGTCTGCTGCTCTTGGTGATATTGCATGTGGAATGGCAGCTGTCAGAATAGCTTCCAAAGATATAGTTTTCTGGTTTCGGTCTCACACTGCTGCAGAAATCCGATGGGGTGGTGCAAAGCATGAACCTGGTGAAAGGGATGATGGTAGGAGGATGCATCCCAGATCATCATTCAAGGCTTTCCTTGAGGTTGTGAAGACAAGGAGCTTACCCTGGAAGGACTATGAAATGGATGCCATTCATTCATTGCAGCTAATACTGAGAAATGCATTCAAAGACACAGAGAATATGGAGATAAGCACGTATGCTATCAATACAAGACTAGGTGATTTGAAGATTGAAGGGATGCAAGAACTGGAAGCAGTGACAAGTGAGATGGTAAGGTTAATTGAAACAGCAACGGTGCCAATTTTGGCTGTTGATGTTCAAGGGATGGTCAATGGATGGAATACAAAAATTGCTGAGTTGACAGGTCTTCCAGTTGAGGAAGCTATTGGGAAGCATTTACTCATGCTTGTTGAGGATTTTTCAGTCGATAGAGTCCAGAAGATGTTGGACATGGCACTGCAGGGTgaggaagagaaaaatgtgCAATTTGAGATCAAAACACATGATTTGAAGATTGATTCTGGTCCTATCAGCTTGGTAGTTAATGCCTGTGCAAGCAGGGATCTTCAAGATAATATTGTGGGGGTTTGTTTTGTGGCCCAAGATATAACTGCTCAGAAGACTGTGATGGACAAATTCACCCGAATTGAAGGTGACTACAAGGCAATTGTACAGAACCCAAACCCATTGATCCCTCCAATATTTGGCACAGATGAATTTGGCTGGTGTTGTGAATGGAATTCAGCTATGACAAAATTAACGGGATGGAAGCGAGAGGAGGTGATGGATAAAATGCTTTTAGGGGAGGTTTTTGGGACCCAAATAGCTTGTTGTCGTCTAAGGAATCAAGAAGCTGTTGTTAATTTTAGCATTGTACTTAACAAAGGCATGACTGGTATGGAAACAGAGAAGGTTCCGTTTGGTTTCTTTGCTCGGGATGGGAAGCATGTAGAATGTCTGCTCTCCGTGAGTAAGAAATTGGATGCAGAGGGTGTAGTTACTGGGGTCTTTTGCTTCTTGCAACTAGCTAGTCCAGAGCTGCAACAGGCATTACATATTCAGCATCTATCTGAACAAACTGCCTTGAAAAGACTGAAAGCTTTAACTTATTTGAAAAGACAAATCCAGAATCCTTTATGTGGGATTATATTCTCCCGAAAATTGTTAGAGAGCACCGAGTTGGGAGCTGAACAAAAACAATTTCTGCAAACTGGCAACCGGTGTCAACACCAGCTTAGCAAAATTCTGGATGACTCGGATCTTGACAGCATCATTGATGGCTACCTGGATTTGGAGATGGTTGAATTCACTCTGCATGAAATTTTGGTTGCCTCCCTAAGTCAAGTCATGACAAAGAGTAATGCAAAGGCTATCCGTGTAGTCAATGATGTTGAAGAGCAGATCATAACAGAAACCTTATATGGTGATAGTCTCAGGCTTCAGCAGGTCTTAGCTGACTTTTTATTGATTTCCATCAATTTCACACCAACTGGAGGTCAGGTTGCTGTAGCAGCCTCGTTAACCAAACATCAGCTAGGGAAACTAGTCCATCTTGCTAATTTGGAGATCAGCATAACACATGATGGTCTTGGGGTTCCAGAAGGATTGCTGAACCAGATGTTTGGACGTGATGGACATGAATCTGAGGAGGGTATTAGCATGCTGATTAGCAGAAAGCTGCTAAAGCTCATGAATGGAGAAGTACGTTATATAAGGGAAGCAGGCAAATCATCTTTCATCTTATCAGTTGAACTTGCCTCAGCCCATAAATCCATGgcttaa 3396 0.4305 MSSSRPSQSSSNNSGRSSRHSARILAQTTLDAKLHATFEESGSSFDYSNSVRLSPGTGTTSGTGNHQSRSDSVTSAYLHQIQKSKLIQPFGCLLALDEKTHKVIAYSENAPEMLTMVSHAVPSVGDHLALGIGTDIRTIFTAPSAAAFQKALGFGEVSLLNPILVHCKTSGKPFYAIIHRVTSSVIIDFEPVKPHEVPMTAAGALQSYKLAAKAITRLQSLPSGSLETLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEVKRPGLEPYLGLHYPATDIPQVTRFLFMKNKVRMIVDCRAKHVKVLQDRKIPFDLTLCGSTLRAAHSCHLQYMENMNSSASLVMAVVVNDNDEDGDSSDAVQPQKRKRLWGLVVCHHTTPRFIPFPLRYACEFLAQVFAIHVNKELELEYQIVEKNILRTQTLLCDMLMRDAPLGIVSQSPNIVDLVKCDGAALLYKNKVWRLGVTPSESQIREIALWLSECHRDSTGLSTDSLSDAGFPGSAALGDIACGMAAVRIASKDIVFWFRSHTAAEIRWGGAKHEPGERDDGRRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDTENMEISTYAINTRLGDLKIEGMQELEAVTSEMVRLIETATVPILAVDVQGMVNGWNTKIAELTGLPVEEAIGKHLLMLVEDFSVDRVQKMLDMALQGEEEKNVQFEIKTHDLKIDSGPISLVVNACASRDLQDNIVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCCEWNSAMTKLTGWKREEVMDKMLLGEVFGTQIACCRLRNQEAVVNFSIVLNKGMTGMETEKVPFGFFARDGKHVECLLSVSKKLDAEGVVTGVFCFLQLASPELQQALHIQHLSEQTALKRLKALTYLKRQIQNPLCGIIFSRKLLESTELGAEQKQFLQTGNRCQHQLSKILDDSDLDSIIDGYLDLEMVEFTLHEILVASLSQVMTKSNAKAIRVVNDVEEQIITETLYGDSLRLQQVLADFLLISINFTPTGGQVAVAASLTKHQLGKLVHLANLEISITHDGLGVPEGLLNQMFGRDGHESEEGISMLISRKLLKLMNGEVRYIREAGKSSFILSVELASAHKSMA 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0485 1131 Gene3D PAS domain 770 882 - -
Ssu4g0485 1131 PRINTS Phytochrome signature 438 458 IPR001294 GO:0006355|GO:0009584
Ssu4g0485 1131 PRINTS Phytochrome signature 719 736 IPR001294 GO:0006355|GO:0009584
Ssu4g0485 1131 PRINTS Phytochrome signature 627 643 IPR001294 GO:0006355|GO:0009584
Ssu4g0485 1131 PRINTS Phytochrome signature 140 162 IPR001294 GO:0006355|GO:0009584
Ssu4g0485 1131 PRINTS Phytochrome signature 556 574 IPR001294 GO:0006355|GO:0009584
Ssu4g0485 1131 PRINTS Phytochrome signature 646 661 IPR001294 GO:0006355|GO:0009584
Ssu4g0485 1131 PRINTS Phytochrome signature 325 346 IPR001294 GO:0006355|GO:0009584
Ssu4g0485 1131 PRINTS Phytochrome signature 240 259 IPR001294 GO:0006355|GO:0009584
Ssu4g0485 1131 PRINTS Phytochrome signature 523 542 IPR001294 GO:0006355|GO:0009584
Ssu4g0485 1131 PRINTS Phytochrome signature 739 759 IPR001294 GO:0006355|GO:0009584
Ssu4g0485 1131 SUPERFAMILY PYP-like sensor domain (PAS domain) 81 194 IPR035965 -
Ssu4g0485 1131 Pfam Phytochrome region 421 596 IPR013515 GO:0006355|GO:0009584
Ssu4g0485 1131 ProSiteProfiles PAS repeat profile. 624 694 IPR000014 -
Ssu4g0485 1131 MobiDBLite consensus disorder prediction 43 71 - -
Ssu4g0485 1131 Pfam PAS fold 627 741 IPR013767 GO:0006355
Ssu4g0485 1131 Pfam PAS fold 757 879 IPR013767 GO:0006355
Ssu4g0485 1131 SUPERFAMILY PYP-like sensor domain (PAS domain) 771 877 IPR035965 -
Ssu4g0485 1131 Gene3D - 940 1118 IPR036890 -
Ssu4g0485 1131 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1127 - -
Ssu4g0485 1131 MobiDBLite consensus disorder prediction 1 21 - -
Ssu4g0485 1131 SUPERFAMILY GAF domain-like 205 405 - -
Ssu4g0485 1131 SMART HisKA_10 901 966 IPR003661 GO:0000155|GO:0007165
Ssu4g0485 1131 ProSiteProfiles Histidine kinase domain profile. 908 1125 IPR005467 -
Ssu4g0485 1131 Gene3D PAS domain 80 328 - -
Ssu4g0485 1131 SUPERFAMILY PYP-like sensor domain (PAS domain) 630 737 IPR035965 -
Ssu4g0485 1131 SMART HKATPase_4 1013 1125 IPR003594 -
Ssu4g0485 1131 ProSiteProfiles PAS repeat profile. 757 809 IPR000014 -
Ssu4g0485 1131 SMART gaf_1 225 418 IPR003018 GO:0005515
Ssu4g0485 1131 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1013 1122 IPR003594 -
Ssu4g0485 1131 Gene3D - 206 569 IPR029016 -
Ssu4g0485 1131 PANTHER PHYTOCHROME A 1 1127 - -
Ssu4g0485 1131 SMART pas_2 626 692 IPR000014 -
Ssu4g0485 1131 SMART pas_2 756 825 IPR000014 -
Ssu4g0485 1131 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 225 398 IPR016132 -
Ssu4g0485 1131 PIRSF Phytochrome_conventional 1 1131 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Ssu4g0485 1131 Gene3D PAS domain 618 755 - -
Ssu4g0485 1131 SUPERFAMILY GAF domain-like 416 594 - -
Ssu4g0485 1131 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 963 1117 IPR036890 -
Ssu4g0485 1131 Coils Coil 405 425 - -
Ssu4g0485 1131 CDD PAS 635 741 IPR000014 -
Ssu4g0485 1131 CDD PAS 768 879 IPR000014 -
Ssu4g0485 1131 Gene3D - 413 586 IPR043150 -
Ssu4g0485 1131 Pfam GAF domain 225 408 IPR003018 GO:0005515
Ssu4g0485 1131 Pfam PAS fold 76 192 IPR013654 GO:0006355
Ssu4g0485 1131 TIGRFAM sensory_box: PAS domain S-box protein 631 747 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0485 Ssu-Chr4 7709089 7713537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0485 1 1128 Histidine Kinase Gene Family AT1G09570 76.971 0.0 1817
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0485 K12120 - gmx:100791098 1973.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0485 4 7709089 7713537 Ssu7g1856 7 37330846 37335368 PCT