Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0481 ATGGCGAGAGTTTTGTGGGTTGGCATTGCTATAGGACTTGTCTTGAGCAACTGGGTTGATGGGTTCGTAGGATATGAACATCACTTCAATGAAACAGAGTTGTCTCTGTTAGAGGCCCATGAAGCTTCCTTATCATACGCCGGGGGGAATCCTCTGCTCGTAGGACTCACCCTAATTCAAAATGCTGCTGCTAAAGGAGCAGTCTGCTTGGATGGAACATTACCTGGTTATCATTTGCATCGGGGATATGGATCAGGATCAAACAGCTGGCTTATTAATTTAGAGGGTGGTGGATGGTGTAATAATATTAGAACGTGTGTTTATCGCAAGAAAACCCGGCGTGGATCATCAGATTTCATGGAAAAGGAGATACCTTTTACTGGAATATTAAGTAATAAGGCTGAAGAAAATCCAGATTTTTTCAATTGGAATAGAGTAAAGCTTCGTTATTGTGATGGTGCCTCATTTGCTGGGGATGGTGAAGATGAGACTGCAGAACTGCAATTCAGAGGACAGCGTATTTGGGCAGCTGCAATGGGAGATTTGATGTCAAAAGGAATGCGTTTGGCTGATCAGGCTCTTCTTTCAGGATGCTCTGCAGGTGGCCTGGCTACTATTATTCACTGTGATGAATTTCGTGATCTCTTTCCAAGGACCACCAAAGTGAAATGTCTTAGTGATGCTGGGTTGTTTCTTGATGCGATTGATGTATCTGGTGGGCATACCCTCAGGAATTTATACAGCGGTGTTGTAGGATTGCAGGGAGCGCAGAAGAATCTGCCACAAATTTGTACTAATCACCTTGATCCCATCTCGTGCTTTTTTCCGCAAAACTTGATTGCCAGTGTTAGAACCCCGCTATTCATTCTTAATGCTGCTTATGATTCATGGCAGATCCAGTCCAGTTTAGCTCCTCCATCTGCAGATCCCCATGGCTATTGGCATGATTGTAGATTAAACCATGCTAAATGCACTGGACCACAAATCCAATTTCTGCAAGGATTCAGGAATCACATGCTGAATGTTATTAAAGGGTTCTCAAGATCAAACCAGAATGGCTTGTTTATTAATTCTTGTTTTTCACACTGCCAAACTGAGAGGCAGGATACATGGTTTGCTGACAATTCTCCCGTTATTAGGAATAAGGCAATTGCTCTGGCTGTTGGAGACTGGTATTTCGATCGAGCAGGTGTTAAGGCCATTGATTGTCCTTACCCTTGTGATAATACGTGCCATCATCTGGTTTTCGGATGA 1254 0.433 MARVLWVGIAIGLVLSNWVDGFVGYEHHFNETELSLLEAHEASLSYAGGNPLLVGLTLIQNAAAKGAVCLDGTLPGYHLHRGYGSGSNSWLINLEGGGWCNNIRTCVYRKKTRRGSSDFMEKEIPFTGILSNKAEENPDFFNWNRVKLRYCDGASFAGDGEDETAELQFRGQRIWAAAMGDLMSKGMRLADQALLSGCSAGGLATIIHCDEFRDLFPRTTKVKCLSDAGLFLDAIDVSGGHTLRNLYSGVVGLQGAQKNLPQICTNHLDPISCFFPQNLIASVRTPLFILNAAYDSWQIQSSLAPPSADPHGYWHDCRLNHAKCTGPQIQFLQGFRNHMLNVIKGFSRSNQNGLFINSCFSHCQTERQDTWFADNSPVIRNKAIALAVGDWYFDRAGVKAIDCPYPCDNTCHHLVFG 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0481 417 Pfam Pectinacetylesterase 52 396 IPR004963 GO:0016787
Ssu4g0481 417 PANTHER NOTUM-RELATED 3 416 IPR004963 GO:0016787
Ssu4g0481 417 PANTHER PECTIN ACETYLESTERASE 3 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0481 Ssu-Chr4 7667869 7672364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0481 53 416 Carbohydrate Esterase AT1G57590 74.451 0.0 598
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0481 K19882 - gmx:100782401 818.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0481 4 7667869 7672364 Ssu4g0508 4 8019469 8024862 ECH
Ssu4g0481 4 7667869 7672364 Ssu7g1850 7 37264949 37269210 ECH
Ssu4g0481 4 7667869 7672364 Ssu4g0481 4 7667869 7672364 ECH
Ssu4g0481 4 7667869 7672364 Ssu7g1850 7 37264949 37269210 PCT